Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00968 ATGTGTTTTTTTCATAATTTATTTTATGTTGTGAATGCAGTATGGAGGGAGTTTCTGTGGGGCGCAGTTGCTGGTGCTTTTGGGGAAGGAATGATGCATCCCGTGGACACTCTGAAGACTCGTGTTCAAAGTCAAGCAATTCTTTTTGGAAGTCAGAATCAAAAGAGCATGCTGGAAATGGTCCAGTCCATCTGGAAAACAGATGGAGTGAGAGGCTTTTACAGGGGGATTGCTCCTGGAGTTACAGGTTCTCTTGCCACTGGAGCTACATATTTTGGTCTTATAGAGTCCTCTAAAAAGTGGATAGAAGAATCTCATCCTAGCCTTAGTCCTCACTGGGCACATTTCATCGCAGGAGCAATGGGAGATACACTTGGTTCATTTATATATGTTCCATGCGAAGTTATTAAGTTGCGCATGCAAGTTCAAGGTGCAAGGACTTCTTGGAGTTCAGCTGTAATTAAGGAAGGCATTTCTAAGAAGCATGGTGTACAGATGTATGGTTATTATACAGGAATGTTACAAGCTGGTTGTTCAATATGGAAGGAGCAAGGGGTGAAAGGATTATTTGCAGGATATTGGTCCACCCTTGCGAGAGATGTGCCATTTGCTGGTTTAATGGTAATGTCTTATGAATCACTAAAAGATTTAACACAGCATGCGAAGCAAACTTGGTCTCCCTATTCGCATTACAATGGCAACAGCTCCTTAGAAGGACTAATTCTAGGGGGATTAGCCGGCGCGCATTATCTCACTACTCCCTTGGATGTCATCAAAACTAGATTGCAAGTTCAAGGATCAACATTAAGGTACAAAGGCTGGTTAGACGTGATGCGTATTATATGGAGGAAGGAAGGTTTGAAGGGTATGTTTAGAGGCAGCATCCCCAGAGTTACATGGTATATGCCAGCTTCTGCGCTTACATTCATGGCCGTCGAGTTTCTGAGAGATCGTTTCAACCAAGTATCGGACAATGGGTCTTTGCCCGAAGTTTCGCCGTTATCTTCGGTTGTGGAGAAGGGGTCTCTGCAAAAGGTGAGCTGA 1044 43.68 MCFFHNLFYVVNAVWREFLWGAVAGAFGEGMMHPVDTLKTRVQSQAILFGSQNQKSMLEMVQSIWKTDGVRGFYRGIAPGVTGSLATGATYFGLIESSKKWIEESHPSLSPHWAHFIAGAMGDTLGSFIYVPCEVIKLRMQVQGARTSWSSAVIKEGISKKHGVQMYGYYTGMLQAGCSIWKEQGVKGLFAGYWSTLARDVPFAGLMVMSYESLKDLTQHAKQTWSPYSHYNGNSSLEGLILGGLAGAHYLTTPLDVIKTRLQVQGSTLRYKGWLDVMRIIWRKEGLKGMFRGSIPRVTWYMPASALTFMAVEFLRDRFNQVSDNGSLPEVSPLSSVVEKGSLQKVS 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41669085 41672141 + Bma008310.1 Bma12g00968 92394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00968 347 Gene3D Mitochondrial carrier domain 9 166 IPR023395 -
Bma12g00968 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 234 318 IPR018108 -
Bma12g00968 347 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 14 335 - -
Bma12g00968 347 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 14 335 - -
Bma12g00968 347 Pfam Mitochondrial carrier protein 14 104 IPR018108 -
Bma12g00968 347 Pfam Mitochondrial carrier protein 237 321 IPR018108 -
Bma12g00968 347 Pfam Mitochondrial carrier protein 111 220 IPR018108 -
Bma12g00968 347 SUPERFAMILY Mitochondrial carrier 14 315 IPR023395 -
Bma12g00968 347 Gene3D Mitochondrial carrier domain 167 339 IPR023395 -
Bma12g00968 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 110 217 IPR018108 -
Bma12g00968 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 12 101 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00968 - - - csv:101208060 503.442
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01644 Bma-Chr7:52040495 Bma12g00968 Bma-Chr12:41669085 6.29E-39 dispersed
Bma12g00968 Bma-Chr12:41669085 Bma01g00866 Bma-Chr1:8135595 3.88E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g653 . . Bda06g00525 . . . . Bma12g00968 . . . . . Car11g00182 . . Cpe04g01464 Bhi02g00689 . . . . . . Cla06g01542 Cam06g1702 Cec06g1764 Cco06g1763 Clacu06g1669 Cmu06g1615 Cre06g2428 . . . . . . . . . Blo15g00333 . . Bpe07g00758 . . . . . Cmo11g00207 . . . . . Cpe18g00704 . . . . . . . . . . . . . . Lsi06g01417 Csa01g00290 Chy02g02445 Cme02g01833
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009832 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 0 2 1 1 1 0 1 1 1 1 5 0 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00968 Bma_Chr12 FPKM 2.947501 3.326193 0.95138 0.804471 10.954795 11.545359 11.373949 0.205382 0.392157 0.37986