Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00969 ATGGCATCGGCGAAGCGATGCCACTACGAGGTCATGGGGCTCTCTCTTGACTGTACGGTGGACGAAATACGATCCGCTTACCGGAAGCTCGCCCTCCAGCGTCATCCGGACAAACTTGTCCAGTCTGGTTTGCCGCCGTCCGACGCCACCGCTCAGTTTCAAGAGCTCCAGCACGCGTACGAGGTGCTCTCCGATCCCAAAGAGCGAGCATGGTATGATTCGCACCGTTCTCAGATTCTCTTCTCCGATCCTAATTCGGCTAATTCCGGGTCCAACTCAGTCGTTCCTGATCTCTTTGCTTTTTTCTCTACTACTGTTCATTCGGGATATTCGGATTCAAAGAAAGGGTTCTATAGGGTTTATTCAGACGTTTTTGATAAAATTTATGCATGTGAATTAAGTTTTGCTAAGAAATTGGGTTTGGGATTAGATTCCGTTCGCGTAGCTCCGACGATGGGGAATTTGGAGAGCCCATACGCGCAGGCAACGGCTTTTTATAGTTACTGGCTTGGATTTTGTACGGTTCTGGACTTCTGCTGGGTGGATCAGTACGATGTGATGGCTGGTCCCAACCGGAAATCAAGGAGGGTGATGGAGGATGAGAACAAGAAGCTAAGAAAGAAGGCCAAGAGGGAGTACAATGACACGGTCAGAGGTTTGGCAGAGTATGTGAAAAAGAGGGATAAAAGAGTAATCGATATGGCTGCAAAGTTGAACTTGGAGATGGAGAAGAAAAGGAAAGAAGAAAAGGATAGAAAGGAGATGTTGAAGAGAGAGAGAACGGAGAGGGCCATGGCTTATGAGGAACCAGACTGGGCTAAAGTTGAAGAGGAAGAGCTGGATGATCTCGGATTTGAAGAAGAGGAGAATAGAAATGGGGGAAAAGAGTTTTATTGTATGTTGTGTGGAAAGAAGTTTAAGAGTGATAAGCAATGGAAGAATCACGAACAGTCAAAGAGGCACAGAGAGAAGGTTGAGGAAATGAAAAAATCACTTGACATTGAGGACGAATTGGGGGAGGTGTCTGAAGAAAGCATGGTTGAAGTGGAGGAAAACAAGGAGTTTGCAGAAGATGAGGTTAGTGGATTGGGGGACAGGCTTATGAAGGACTTCGGTATTGAGGATGATGATGCTAAAAATCTGGCTGCACCAAATGATGAGAATGAGTTTGATGGGGAGCTTGATGTAAGTAGAATGGAAAGTGTCGTTGAAGCAATTGGATCAGACGATGAGGATGGCGAAAGCGGCATGCTTGAAGCAATGGTGGCTGGGCACAAAATTAAGAGGAATGTGACTTCGAGCCAACAACCCAAGGTTTCTTCTAAAGCAATTCATGTTGAAAATGATAGCGACGACGCTGGCTTTATGGAATACGATAATCGAAAGGGAAGAAGAAGGAATCGTAGAGCCAAGAAAGAGAAAGGAAATAGAAATGGTGTAAAAGAGATGGAGGATGATGAGCTCAGAGATAATGAGGAAGCTAATGCCAATGTTAATTCACATATGGAGGAGGGATCTTCATACTCTGAAGAAATTAATGAGAACGATAATAAAGGGAATGATGACTTCTCAAGCAACAGAAAGAATTCAAGTAAACCTACTGATAATCAGTCGAAGACAAAGAATGCCATGTTGACCACTTCCAAGTTATCATCGAAGGGGAAGGACTCTAAGGGAAAATCGAAGAACGCAAGCAACATGTGCGACACGTGTGGAGAGGATTTTGAATCGAGGTAA 1737 44.73 MASAKRCHYEVMGLSLDCTVDEIRSAYRKLALQRHPDKLVQSGLPPSDATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSANSGSNSVVPDLFAFFSTTVHSGYSDSKKGFYRVYSDVFDKIYACELSFAKKLGLGLDSVRVAPTMGNLESPYAQATAFYSYWLGFCTVLDFCWVDQYDVMAGPNRKSRRVMEDENKKLRKKAKREYNDTVRGLAEYVKKRDKRVIDMAAKLNLEMEKKRKEEKDRKEMLKRERTERAMAYEEPDWAKVEEEELDDLGFEEEENRNGGKEFYCMLCGKKFKSDKQWKNHEQSKRHREKVEEMKKSLDIEDELGEVSEESMVEVEENKEFAEDEVSGLGDRLMKDFGIEDDDAKNLAAPNDENEFDGELDVSRMESVVEAIGSDDEDGESGMLEAMVAGHKIKRNVTSSQQPKVSSKAIHVENDSDDAGFMEYDNRKGRRRNRRAKKEKGNRNGVKEMEDDELRDNEEANANVNSHMEEGSSYSEEINENDNKGNDDFSSNRKNSSKPTDNQSKTKNAMLTTSKLSSKGKDSKGKSKNASNMCDTCGEDFESR 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41684690 41686925 + Bma008311.1 Bma12g00969 92395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00969 578 MobiDBLite consensus disorder prediction 428 443 - -
Bma12g00969 578 MobiDBLite consensus disorder prediction 526 552 - -
Bma12g00969 578 SMART ZnF_U1_5 294 328 IPR003604 GO:0003676|GO:0008270
Bma12g00969 578 SMART dnaj_3 6 68 IPR001623 -
Bma12g00969 578 MobiDBLite consensus disorder prediction 428 578 - -
Bma12g00969 578 Gene3D DnaJ domain 1 92 IPR036869 -
Bma12g00969 578 Coils Coil 239 259 - -
Bma12g00969 578 MobiDBLite consensus disorder prediction 341 361 - -
Bma12g00969 578 Coils Coil 195 215 - -
Bma12g00969 578 Coils Coil 346 366 - -
Bma12g00969 578 Pfam Zinc-finger double-stranded RNA-binding 297 322 IPR022755 -
Bma12g00969 578 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Bma12g00969 578 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
Bma12g00969 578 Gene3D Classic Zinc Finger 285 344 - -
Bma12g00969 578 Pfam DnaJ domain 8 73 IPR001623 -
Bma12g00969 578 ProSiteProfiles Zinc finger C2H2 type domain profile. 297 326 IPR013087 -
Bma12g00969 578 SUPERFAMILY beta-beta-alpha zinc fingers 285 332 IPR036236 -
Bma12g00969 578 CDD DnaJ 7 65 IPR001623 -
Bma12g00969 578 SUPERFAMILY Chaperone J-domain 4 83 IPR036869 -
Bma12g00969 578 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Bma12g00969 578 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 578 IPR044648 -
Bma12g00969 578 MobiDBLite consensus disorder prediction 341 355 - -
Bma12g00969 578 MobiDBLite consensus disorder prediction 444 463 - -
Bma12g00969 578 PRINTS DnaJ domain signature 48 68 IPR001623 -
Bma12g00969 578 PRINTS DnaJ domain signature 27 42 IPR001623 -
Bma12g00969 578 PRINTS DnaJ domain signature 9 27 IPR001623 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00022 Bma-Chr12:731393 Bma12g00969 Bma-Chr12:41684690 4.05E-16 dispersed
Bma12g00969 Bma-Chr12:41684690 Bma14g01313 Bma-Chr14:23982839 6.04E-14 dispersed
Bma12g00969 Bma-Chr12:41684690 Bma03g00034 Bma-Chr3:344089 3.65E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58153 PF00226 DnaJ 2.20E-20 CL0392 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00969 K09506 - csv:101217729 632.869