Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00972 ATGGATATTACACAAGGAGAAGAGAAGCGAGTTAAAAGACAGATTCATAGTTCAGAAGATGATGGTTCTGAGTCAGAAGAAGAAAGACTACGGGATCAAAGGGAGAGGGAGCAGTTTGAGCGCAATATTAGAGAACGTGATGCGGTTGGGACACGGAAGTTGACAGAGTCTAAGTTAACTCGAAGGGAGGAAGAAGAGGCAATCCGGAGATCAAATGCATTCGAGCAAAATGAACTTGAAACTTTGAGGAAAGTTTCAAGACAAGAGTATTTAAAAAAAAGGGAGCAAAAGAAACTCGATGAAATTAGAGATGACATTGAAGATGAGCAATATTTGTTTGAAGGTGTAAAGCTCACTGATGCAGAATACCGTGAGTTAAGGTACAAAAAGGAAATTTATGAGCTTGTGAAGAAACGATCAGAGGAAGTTGACAACAGCATTGAGTACAGGATGCCAGATGCATATGACCTAGATGGTAGAATTAATCAGGAGAAGAGATTTTCTGTAGCTGTGCAGCGTTATAGGGATCCAAGTGCTGTGGAGAAAATGAATCCATTTGCGGAACAAGAGGCTTGGGAGGAACATCAAATTTCGAAAGCAAACTTGAAATTTGCTTCCAAAAGTAAAAGGCCACCCTCAGATGACTATCAGTTTGTTTTTGAAGACCAGATTGAGTTCATCAAGGCATCAGTAATGGAAGGCGACGAGTTTTCTGAACAACCAACCGAGTTACTTGAAAAGTTAGCGGCAAAATCAGCTCTGGAGAAACTTCAGGAGGATAGGAAAACTTTACCAATATACCCATATCGTGAAGAATTGCTCCAAGCTGTTAACGATCATCAGGTTCTTGTTATTGTGGGTGAAACTGGTTCAGGAAAGACTACGCAAATACCCCAATATCTTCATGAAGCTGGGTATACCAAACGTGGACAGATTGGATGTACCCAACCACGTCGAGTTGCTGCTATGAGTGTCGCTGCCAGAGTTTCACAAGAAATGGGTGTCAAACTCGGGCATGAGGTTGGTTATTCCATTCGCTTCGAGGATTGCACATCAGAGAAAACTGTCTTAAAATATATGACAGATGGGATGCTGTTACGAGAATTCTTGGGTGAGCCTGATCTTGCAAGCTACAGCGTGGTTATGGTGGATGAGGCTCATGAAAGAACCCTGTCAACTGACATTCTATTTGGTCTAGTTAAGGATATATCACGATTTCGGCCTGATCTTAAATTGTTGATTTCAAGTGCAACGCTTGACGCTGAGAAATTTAGTGATTACTTTGACTCTGCTCCAATATTCAAAATTCCTGGAAGGCGGTATCCAGTGGAAATAAACTTTACGAAAGCGCCTGAAGCAGATTACTTAGATGCAGCAATAGTGACCGCTCTTCAGATTCATGTAACACAATCTTCCGGAGATATATTAGTGTTCCTCACTGGTCAAGAAGAAATTGAAACAGCAGAAGAAATTTTGAAGCACAGAACAAGGGGTCTTGGTACAAAGATAGCAGAGCTAATCATCTGCCCTATATATGCCAACCTACCAACAGGAGCTGCAAGCTAA 1566 41.44 MDITQGEEKRVKRQIHSSEDDGSESEEERLRDQREREQFERNIRERDAVGTRKLTESKLTRREEEEAIRRSNAFEQNELETLRKVSRQEYLKKREQKKLDEIRDDIEDEQYLFEGVKLTDAEYRELRYKKEIYELVKKRSEEVDNSIEYRMPDAYDLDGRINQEKRFSVAVQRYRDPSAVEKMNPFAEQEAWEEHQISKANLKFASKSKRPPSDDYQFVFEDQIEFIKASVMEGDEFSEQPTELLEKLAAKSALEKLQEDRKTLPIYPYREELLQAVNDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGQIGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTALQIHVTQSSGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTGAAS 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41787310 41803553 - Bma008316.1 Bma12g00972 92398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00972 521 MobiDBLite consensus disorder prediction 1 72 - -
Bma12g00972 521 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 379 388 IPR002464 -
Bma12g00972 521 PANTHER ATP-DEPENDENT RNA HELICASE 13 517 - -
Bma12g00972 521 PANTHER OS05G0389800 PROTEIN 13 517 - -
Bma12g00972 521 Gene3D - 440 520 IPR027417 -
Bma12g00972 521 Gene3D - 217 439 IPR027417 -
Bma12g00972 521 Coils Coil 92 112 - -
Bma12g00972 521 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 274 437 IPR014001 -
Bma12g00972 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 516 IPR027417 -
Bma12g00972 521 SMART ultradead3 262 446 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00972 K12813 DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13] - jre:108990957 850.506
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00972 Bma-Chr12:41787310 Bma13g00469 Bma-Chr13:8847581 2.53E-117 dispersed
Bma12g00972 Bma-Chr12:41787310 Bma09g00802 Bma-Chr9:46742345 3.60E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g625 . . Bda06g00528 . . . . Bma12g00972 . . . . . Car11g00178 . . Cpe04g01469 Bhi02g00257 . . . . . . . . . . . . . . . . . . . . . . Blo15g00330 . . Bpe07g00762 . . . . . Cmo11g00202 . . . . Cpe09g01050 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005975 1 6 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00972 Bma_Chr12 FPKM 0.167318 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0