Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00974 ATGCTCGGAAAATCGACAGTTATTGTGAAAATTGGGCTTTTTTCCCGATCGTTGGCGAATTTGATAAACGCAATCATAGAATCACTTATCGGCTATCGATCGTTCTTCCAGTTCAAACCTCGTCGGTCTCTTCAAATCCACCCTTTCATGTTTCATCACCAACCTTCCTCGTCCTATTTTTATCATGTTTCTCCCTCCTTCACTGCGAATCCAGCTCCAGTCACGTCGTGTTCTCAGCCTGCGGTGCCGTCCGTCATTGCCTTACTGCCTGCGGTTAACCAGCCTGGCACCGACCCATATGCTGCCAATTTGGGGTCCTACCCGTCGACCCACGTAGGATATGAAGGTCAAACGCAAGTTTTTCAGGACCCAAACGCACGCTCTTATACTGGGATCGTTGAACAAGCTGACCCAAGAAATTATGAATATGCAATACCTTCTCAAGAGTACCAAGTGACACCTACAAGTTTAACTTCTTCGTGGAATAGCAATCAGAATGGTCAATCTATTGTAAATCATACTGCAAGGATTCCGTATGAAGCAAATTTTAATAAATCAATACGGTGTGAGGTTTGCAAAATTGATTGCAACAGCAGAGATGTTTATGAAAAACACATACAGGGAAAGAAGCACAGAAATAAATTGAAATTGCGTGATTATTCCTTGCATACAGTGTTACCAAAAACTGCTCATGCCTTCAATGACATCAATATTTCTACTGAAATCAAAACTATCCATGGACAAATGGCACCTGTGCTTTCATTTGTTACCGCTGGTGAGGATTTGGAGAAGAAAAAACAAAAGGTTATAACCGGTGGTGCAGCAGTCGAATCCGTGAGAGTTTGCAGAATATGCAACGTTGTGTGTAATAGTGAAGATGTATTCATGAAACATCTGGCTGGGAAAAAGCACTCTGCTCTGGCTCACTTGATAGCTCAAAATCCCTTCGTGATTGGGCCGGTGGAGAATCCGGCTGCCACTAAATCCAAAAATAGCGATCTGGAAAACTCGTGCAAACCATCAGCTCAGTCTGGTATGCCGGAAGATCTCGAGTCGAAGAAGAGGAAAGTTTTGGAGAGTGGAGCAGCTGCTGGAGCTGTTAAGGTATGCACCATGTGTCAATTTTCATCTATCTGGCCAGAAACATGCCAATATGATGAAGAAACAGCAAGAAGGTAG 1179 43.43 MLGKSTVIVKIGLFSRSLANLINAIIESLIGYRSFFQFKPRRSLQIHPFMFHHQPSSSYFYHVSPSFTANPAPVTSCSQPAVPSVIALLPAVNQPGTDPYAANLGSYPSTHVGYEGQTQVFQDPNARSYTGIVEQADPRNYEYAIPSQEYQVTPTSLTSSWNSNQNGQSIVNHTARIPYEANFNKSIRCEVCKIDCNSRDVYEKHIQGKKHRNKLKLRDYSLHTVLPKTAHAFNDINISTEIKTIHGQMAPVLSFVTAGEDLEKKKQKVITGGAAVESVRVCRICNVVCNSEDVFMKHLAGKKHSALAHLIAQNPFVIGPVENPAATKSKNSDLENSCKPSAQSGMPEDLESKKRKVLESGAAAGAVKVCTMCQFSSIWPETCQYDEETARR 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41812792 41815331 + Bma008318.1 Bma12g00974 92400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00974 392 PANTHER - 316 374 - -
Bma12g00974 392 MobiDBLite consensus disorder prediction 327 354 - -
Bma12g00974 392 PANTHER ZINC FINGER RNA-BINDING PROTEIN 316 374 - -
Bma12g00974 392 MobiDBLite consensus disorder prediction 327 343 - -
Bma12g00974 392 PANTHER ZINC FINGER RNA-BINDING PROTEIN 51 312 - -
Bma12g00974 392 Pfam Zinc-finger of C2H2 type 282 304 - -
Bma12g00974 392 Pfam Zinc-finger of C2H2 type 188 211 - -
Bma12g00974 392 SMART c2h2final6 280 304 IPR013087 -
Bma12g00974 392 SMART c2h2final6 187 211 IPR013087 -
Bma12g00974 392 SUPERFAMILY beta-beta-alpha zinc fingers 179 217 IPR036236 -
Bma12g00974 392 SUPERFAMILY beta-beta-alpha zinc fingers 276 306 IPR036236 -
Bma12g00974 392 Gene3D Classic Zinc Finger 172 219 - -
Bma12g00974 392 Gene3D Classic Zinc Finger 260 309 - -
Bma12g00974 392 PANTHER - 51 312 - -
Bma12g00974 392 SMART ZnF_U1_5 184 218 IPR003604 GO:0003676|GO:0008270
Bma12g00974 392 SMART ZnF_U1_5 277 311 IPR003604 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00974 - - - jre:109015164 191.815
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g614 . . Bda06g00530 . . . . Bma12g00974 . . Cma10g00222 . Car10g00206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe07g00764 . . . . . . . . . . . Cpe18g00771 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011197 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00974 Bma_Chr12 FPKM 9.100894 10.374719 7.81084 8.429014 8.915775 7.849 9.224413 13.881295 11.076846 11.824769