Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00976 ATGGAGAAGAGTAGCGATGGAGGGGATGATCACAGCTCAGGATGGCTAGAAGTGAGAAAGAGACACAGAAACAGTTCAAAGTTTTCTCTACAGCGTTCTGATGGGGAAATTTCAGGAAAAAATTCTTCTAAATGTCAGAGTATTCAGAACTCATTGGGTAAACATGCTGGGCGTGAGAACTGCAGATCTCATCCTTCAAAATTAGGGAAAAGTAATGCTGTACATTTTAATGATGTTGCTGGCAATTCTCTTACCCTGCCAAATGAAGACAAAACATGTATTCACTATCTTGATAAACGTGTTATAAGGCAAGATGGGTCTACAAAGCCATCACCCGCATTTGTTACTAATTCTCTTGGTGAAAGTGGAGATTGTGATAAAAATTTTAAATCTGATAAGCTTGAGGTCGTTCACAAAATAAAGTGGGGTCATCTAGAGGATGCTGATTTGTTGCTAAATGATAATGTTCTTGAAGCTGGAATCAAATTTGGTGATATAGAAGGTGCTAATGTAGTTTGCTCTAGGAAGCAAGAAGATAGCCCTGATGTGGGGTTATCTCTAGATAGTGTTCCCCGTCAGACAGTTTTAACAACTCAAAGGGATGATTTATGTGATGATAACAGTCGAGAAGTCAATGAGATATCTTCAGAATGTGTAGAATTACAAGTCAAAAGTAAAGTTAATGTCGATCCTGATCATAATTCAAACAGTGAAGAAATAAATACCGAGGATGAAAAGCATGTAAATGATGATTGTTTTGTAACAAATTCTCCCTTGATTGAAGAAGCTGTGAAATTTCAAGTTATAACAGAGGTAGATGATTCCGAAATTTCTAATGCAATGGAAAAGAATGGAATGTCAAGATCATCTCTGTCTGCCCATGATACAGAGTTAGTTCCAGCTAAAAGGGTTGAATTTGAAGCTTCTAGTAAATCAATCACATATTCTGTTGAAGAGGTTCAGATTCCTGAGGCGGGTGCAAAACATGATGATGCGCCAAACACAAATCTCGGGAGTGCCCTTGGCGAAGGCGAGACAGCTGAAAGTAAAGAAAGGTTTAGGCAGCGTCTCTGGTGCTTTCTGTTTGAAAATCTTAATAGGGCAGTAGATGAACTTTATCTTCTTTGCGAACTTGAATGCGATGTGGAACAGATGAAAGAGGCTGTTCTTGTTCTTGAAGAGGCTGCATTTGATTTTAGAGAACTAAATGGTCGAATGGAGGAGTTTGAAAAGGTGAAGAAGTCCTCTTTATTGGCAGTTGCTGATGGGGTGTTGCCAATAACTTTAAAGGGTGACCACCGCAGGCCACATGCTCTCTCTTGGGAGGTTCGAAGGATGACTACTTCATCTCACAGAGCAGAGATACTTTCTTCATCGCTGGAGGCTTTTAAGAAAATTCGTCAAGAGAGAGCTATCGACCACACATCTAATGATACTAATATCCAGGGGCTTGAGTCACTCAATCTCCAACCATTCGCCGAAACAAACTCATCCGTGGTAACTCACGATGCACCTAGTTCGAAAGATTCAGTTACAAAGTCAAGCTTAGAAAGTAGAGATTTGAATATCACCCTTGGTGTCCAAAGTGGAGAAGGGAGAAAGATTGAGTCAACCAGATTCAGGAAGATGAATTTGGCACAAAATGGTCGTCCCTCACCACCATTTAGTGTTAATTCATCTAAGCCACCTGCTGCTGGAAAGTGTAGGAAAGAACAACTTGAGTTGGACGTGGAGAAGTTACTTCCTAGGAGAGAGAAAGTCCGCACAGAAAATAATAGTGATAAAATTCAGAAATCTACAGATCAGTTCAAAAAGGTGACAGTGTTTCCAGAAAAAGATAAGGAAAAAGAAAGGAGGAATACTGCTCCATGGAAATCCATGGATGCTTGGAAAGAGAAGAGGAACTGGGAGGACATTCTTTCCTCCTCATCCCGAGGCACTGCACGTGTTTCACATTCACCTGGAATGCACAGGAAAAGTGCTGAGCGAGCTCGTGTATTGCATGATAAACTAATGTCACCTGAGAAGAAGAAAAAGACTGCAGTGGATTTAAAAAGAGAAGCAGAAGAAAAGCATGCCCGTGCAATGAAAATCAGAAGTGAGTTAGAGAATGAGAGAGTTCAAAAGCTGCAACGCACGTCAGAAAAATTGAATCGTGTCAATGAATGGCAGGCTGTACGTACTATGAAATTACGGGAAGGAATGTTTGCACGTCAACAACGCAGTGAATCTCGGCACGAAGCATTTCTAGCCCAAGTTGTGAAGAGAGCTGGCGATGAGAGCAGCAAAGTAAATGAGGTCCGTTTTATCACCTCTTTAAATGAAGAAAACAAAAAAATAATATTGCGCCAGAAGCTTCATGGTTCTGAGTTAAGGAGAGCTGAAAAACTGCAAGTGATGAAAACTAAGCAAAAGGAGGATATGGCCCGGGAAGAAGCTGTTTTAGAACGAAGAAAACTTATTGAAGCTGAGAAGTTGCAGCGCCTTGCTGAAACACAGCGGAAGAAGGAAGAGGCTCACGTTAGAAGGGAGGAGGAACGTAAAGCATCAAGTGCAGCCCGTGAAGCAAGGACATTAGAACAAATACGAAGAAAGGAAGAAAGGGCAAAAGCCCAGCAAGAAGAAGCTGAACTTTTGGCCCAGAAGTTGGCTGAGAGACTCAGTGAAAGCGAGCAACGCCGAAAGTTTTATTTGGAGCAAATACGGGAAAGGGCTTCTATGGATTTTCGAGATCAATCTTCACCTTTAATGCGTCGATCAGTGAACAAGGATGGGCAGGGTCGATCTCCACCGGCTAATAGTGGCGAAGACCGGCAACCAAGCAACTCTGACTTTGTGGGTACTAGTCCTGTAGTGGACAATGCTGTCCTTCAAAATTCAGTGAAGCGGAAGATTAAAAGAATTCGGCAGAGGCTTATGGCTTTAAAGTATGAATTTATTGAGCCTTCTATCGGTGCAGAAAATGTTGGAATTGGTTATAGAACAGCAGTTGGAACTGCAAGAGTAAAAGTTGGTAGGTGGCTACAAGAACTTCAGCGACTTCGGCAAGCTAGAAAAGAAGGAGCTGCCAGTATTGGGCTAATAATTGCTGATATGATCAAGTTCTTGGATGGAAAAGACCCTGAGCTACAAGCTTCTCGCCAGGCTGGTTTACTTGATTTTATTGCTTCAGCTCTTCCTGCCTCTCATACATCTAAACCTGAAGCCTGCCAGGTGACAATTCATCTTCTAAGATTGCTGAGGGTGGTGTTATCTGTGCCTGCAAATAGGGGTTACTTCCTTGCACAGAATCTCTTACCACCAATCATCCCTATGCTATCAGCAGCACTTGAGAACTACATAAAAATTGCAGCATCTATTAATGCCCCTGGCAACTTGAATATTACGTCAAGTAAAACATCGGTTGAAAATTTTGAGTCAATCTCTGAAGTGGTTGATGGCTTTTTGTGGACTGTCAGTACAATAATGGGCCATGTAAGTTTTGAAGAACGACAAATCCAAATGTGGGACGGATTGCTAGAGCTGTTGATCACCTACCAAGTTATTCACAGGTTGCGAGATCTTTTTGCACTTTATGATAGACCCCAAGTCGAAGGGTCAGCATTTCCTTCTTCCATTCTCTTAAGCGTAAATCTTTTGGTGGTTTTAACTTCAAGACCTGGAATGAGTCGCTCCATTAATTGGGAGTTACTTCCCATTGAGACAATTCAAAAGGTGGAATTAGCTGACTTGTCTGATTCAAAAGTTTCCCATGTAACTGAACCTAATGGAGATTGTGAACCTCCATCACCTCTAATTAGTCATGCTGGTGGTGCATATATATCAGACGTGGCAGCAGATAGTCTAGTATCTGAAGAAACTCTAGCCGATAGTAAAATTGAGCAGGCTGTCTCTTCAGGTGAGTTGAATAATCTCAACGCTGTCCAGAATGATATCTTGACTGAAGTTGAGAAAGGTAAAGAAATTCAGAAGCCATTAATACCTCAGAGGTACGAGGACGGTGCAGTGAATTATGTTACAGAGCAAAAAGTTGAAATGAACTTAGAGCAACCAGTAGCAATTCTTCTATCTTCTATGTCTGATACTGGCCTTGTCAGTCTCACTTCTTTGTTAACAGCTGTGCTGCTACAAGCAAACAATAGACTCTCTTCTGAGCAGGGCTCCTATGTTCTTCCATCTAATTTTGAAGAGGTTGCTGTTTGTGTGCTAAAGGTGTTGAATCATCTTGCACTTTTGGATCTCAAGTTCATGCAGAGAATGCTAGCTAGGTCAGACTTAAGGATGGAGTTTTTTCATTTAATGAGCTTCCTTCTTTCTCACTGCACCAGCAAGTGGAAAGATGCAAAAGATCAGATTGGTTTACTTCTGCTTGAATCTTTGCTACTTCTTGCTCACTTTGCCTTATTCCATCCTGGCAATCAAGCAGTCCTACGCTGGGGAAAGAGTCCTACTATCCTTCACAAGGTATGCGATCTACCTTTTGTGTTCTTCAGTGACTCCGAATTGATGCCTGTCTTAGGAAGCACATTGGTCGCTATTTGTTACGGGTGTGAGCAGAACAAGTCTGTGGTTCAGCAAGAGCTAAGTACAGATATGCTTCTTTATTTGTTAAGGTCTTGTAGAGATGTCATACCTGCCCACCGATTGAATTCAACCATCGATAGTTTGCCAGCTGACAATTTGAGTGAATGTAATCAACATGGCCCTGAATTTAGGAAACACCAAATGGATAGTCCCATAAGATCTAGTCGTTGTGTTGGCCGAACTACAAAGGTTTGCTTGGGGAAGCCAGGTTATTTGGGAAATAGCATTAGGATTGGGAGAGCAAGAAATTTAAAAGACAACAAGATGACCAAACCCACGGAAGAAATGGCTTTTAAGCACAATCAACCAGTTTCAGATTTTGCCAAGGTTATGTTGCATTATAGATTCACCTGCAGCTTCATTGATAGAGCAGAGCAGTTCTTTTCAGCCGGGATTCCTATTGAAGTAAATGAATAG 5001 41.55 MEKSSDGGDDHSSGWLEVRKRHRNSSKFSLQRSDGEISGKNSSKCQSIQNSLGKHAGRENCRSHPSKLGKSNAVHFNDVAGNSLTLPNEDKTCIHYLDKRVIRQDGSTKPSPAFVTNSLGESGDCDKNFKSDKLEVVHKIKWGHLEDADLLLNDNVLEAGIKFGDIEGANVVCSRKQEDSPDVGLSLDSVPRQTVLTTQRDDLCDDNSREVNEISSECVELQVKSKVNVDPDHNSNSEEINTEDEKHVNDDCFVTNSPLIEEAVKFQVITEVDDSEISNAMEKNGMSRSSLSAHDTELVPAKRVEFEASSKSITYSVEEVQIPEAGAKHDDAPNTNLGSALGEGETAESKERFRQRLWCFLFENLNRAVDELYLLCELECDVEQMKEAVLVLEEAAFDFRELNGRMEEFEKVKKSSLLAVADGVLPITLKGDHRRPHALSWEVRRMTTSSHRAEILSSSLEAFKKIRQERAIDHTSNDTNIQGLESLNLQPFAETNSSVVTHDAPSSKDSVTKSSLESRDLNITLGVQSGEGRKIESTRFRKMNLAQNGRPSPPFSVNSSKPPAAGKCRKEQLELDVEKLLPRREKVRTENNSDKIQKSTDQFKKVTVFPEKDKEKERRNTAPWKSMDAWKEKRNWEDILSSSSRGTARVSHSPGMHRKSAERARVLHDKLMSPEKKKKTAVDLKREAEEKHARAMKIRSELENERVQKLQRTSEKLNRVNEWQAVRTMKLREGMFARQQRSESRHEAFLAQVVKRAGDESSKVNEVRFITSLNEENKKIILRQKLHGSELRRAEKLQVMKTKQKEDMAREEAVLERRKLIEAEKLQRLAETQRKKEEAHVRREEERKASSAAREARTLEQIRRKEERAKAQQEEAELLAQKLAERLSESEQRRKFYLEQIRERASMDFRDQSSPLMRRSVNKDGQGRSPPANSGEDRQPSNSDFVGTSPVVDNAVLQNSVKRKIKRIRQRLMALKYEFIEPSIGAENVGIGYRTAVGTARVKVGRWLQELQRLRQARKEGAASIGLIIADMIKFLDGKDPELQASRQAGLLDFIASALPASHTSKPEACQVTIHLLRLLRVVLSVPANRGYFLAQNLLPPIIPMLSAALENYIKIAASINAPGNLNITSSKTSVENFESISEVVDGFLWTVSTIMGHVSFEERQIQMWDGLLELLITYQVIHRLRDLFALYDRPQVEGSAFPSSILLSVNLLVVLTSRPGMSRSINWELLPIETIQKVELADLSDSKVSHVTEPNGDCEPPSPLISHAGGAYISDVAADSLVSEETLADSKIEQAVSSGELNNLNAVQNDILTEVEKGKEIQKPLIPQRYEDGAVNYVTEQKVEMNLEQPVAILLSSMSDTGLVSLTSLLTAVLLQANNRLSSEQGSYVLPSNFEEVAVCVLKVLNHLALLDLKFMQRMLARSDLRMEFFHLMSFLLSHCTSKWKDAKDQIGLLLLESLLLLAHFALFHPGNQAVLRWGKSPTILHKVCDLPFVFFSDSELMPVLGSTLVAICYGCEQNKSVVQQELSTDMLLYLLRSCRDVIPAHRLNSTIDSLPADNLSECNQHGPEFRKHQMDSPIRSSRCVGRTTKVCLGKPGYLGNSIRIGRARNLKDNKMTKPTEEMAFKHNQPVSDFAKVMLHYRFTCSFIDRAEQFFSAGIPIEVNE 1666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41822898 41832046 + Bma008320.1 Bma12g00976 92402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00976 1666 MobiDBLite consensus disorder prediction 913 949 - -
Bma12g00976 1666 MobiDBLite consensus disorder prediction 545 570 - -
Bma12g00976 1666 Coils Coil 685 705 - -
Bma12g00976 1666 MobiDBLite consensus disorder prediction 831 859 - -
Bma12g00976 1666 PANTHER S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM 25 1658 - -
Bma12g00976 1666 MobiDBLite consensus disorder prediction 30 56 - -
Bma12g00976 1666 MobiDBLite consensus disorder prediction 1 68 - -
Bma12g00976 1666 Coils Coil 829 900 - -
Bma12g00976 1666 MobiDBLite consensus disorder prediction 496 515 - -
Bma12g00976 1666 MobiDBLite consensus disorder prediction 324 345 - -
Bma12g00976 1666 Pfam S phase cyclin A-associated protein in the endoplasmic reticulum 347 449 IPR032446 -
Bma12g00976 1666 MobiDBLite consensus disorder prediction 907 949 - -
Bma12g00976 1666 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00976 K24869 SCAPER; S phase cyclin A-associated protein in the endoplasmic reticulum - qsu:111994725 1853.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g620 . . Bda06g00532 . . . . Bma12g00976 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo15g00327 . . Bpe07g00766 . . . . Cmo10g00171 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007144 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00976 Bma_Chr12 FPKM 22.685484 23.761158 21.513529 22.877285 33.430042 35.34491 34.352219 17.979282 18.471083 18.72645