Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00977 ATGATTTGTCAAATCTGGTTATTGAACCTAATCCGTGAAATCTTTCCATCATATTTTCTAAATGCATTTCAACTTACCTTGTCTATTTTCCTAGGTGATCGTAGACCGTACGACATTTTTCATCAGATAGACATGTTATGGCCTGGTTTGCTGGGAAAGACCAAGTATTGTTTTGCAAAAACTTACTGTGCAGTTGAATATGTTACTACTGCTCAGGGAAAAACGTTTCAGGATTTCTCAAAGGGAATTCGCTTGGAAGAGTTGAATGTTTTACTCAAGCAAACAGTCATGATTAGACGTTTGAAAGAACATGTGCTTGTTGAGCTACCTCCCAAACGCAGGCAAATTATAAGATTGTTGTTAAAGAAATCAGACATAATTGTAGCAAAGGCTGCTGTTAGGGAGTTACATAATGGCCACATTGAGAGAAGTGATGGGGAGACTTTAGACAAATCTAATGATAATGGGAAAGTAAGAATGGGACAACTCAACTATCAAGAAGTAGGTATTGCAAAACTGTCTGGGTTTCGAGAATGGTTTTGCATTCACCCTTTAATTACTGAAACTGATGGAGTAGTGGACTTGGATTCCATGAGTAGTTCTCAAAAAATGATCATTTTTGCCCATCATCATAAAGTGCTTGATGGAGTACAAGAACTCGTGTGCGAAAAGGGGATTGGCTTTGTCCGCATTGATGGAAACACCCTCGCCAGGGAAAGGCAATCAGCAGTTAAATCATTCCAGTCATCAGCTGAGGTCAAAATTGCGATAATAGGTGTAACTGCTGGTGGTGTTGGACTTGATTTCTCATCAGCACAAAATGTTGTGTTCTTGGAGCTTCCGCAGTCCCCATCATTGATGCTGCAGGCTGAGGATAGAGCTCACAGACGAGGACAAACAAATGCGGTCAACGTGTACATCTTCTGTGCTAAGGATACTTTGGATGAGTCACTTTGGCGAAGTTTAACCAAGAGTTTACAACGTGTTTCTTCTGCAACAAATGGGAAATATGATGCAATTCAAGAGATAGAGGTTGACACTGTCTCTTATCTAAAAACTTCTGATAAAACTGAGACAAGTCTTGGAAATCAGCTTTTGGACGTAGCAGCAAGTGATGAGCCCTCATCTGTGAATACAGAGCCACAAGATAAGGACTCTGTCAAGGATGTATACTCTACTGAAGTGCATGATGAAGTGGCTGAAAATATCAATGATCAGTCTAGTAAACTTCACAAAAATCTTAGTTGTTCAACTAAAACAGACATGCATCATGAGGATCCTAATTTCAAGGTCGTGGAAGTAGAAAAGAGTTTATTCTTAAAGAGCGAAATGAAAGAAAATTTTGAAGCTGAAACTGAGAAACTTAACAGAGTTCTCTCCCCTCGATCAGATCGACTCAATGGAGGGAACGATCAAGCAAAGAAAGAACAAAATTTCTATGATCAAACAGAGAAGATACATGGACCAGCTATACCAAGGGACACTAATAGAAGTTACACTAAGGATGCAGATTCTTTACGATTTGAGGTTAGCCAATATACTGGAAGGATTCACTTGTATACCTGCATATCTGGAACCGATATGAGACCAAGACCACTCTTTGTCAGTTTTCGACCTGAGGAACTTGAAATACTGACTTCAGATGATAGTGAGTGGACAGAGGCCAATTCCTTGAAAGAGACATCAATATCGAAAAATGCTCTTCATGAATTTATTGAAGAGTGGAACAGATTAAGACCCATTGAACAAAAAAAGTTGCTTGGAAAGCCTTTGCAACTTCCTTTATATGTCGAGTTATGCTACTTGAGGGAAAACATCCATCACAATACTAATGGAATATTGAAGATTAAAAGTAAGCGACGGAATACACCTTTTAACGAGATTAGCCAACCGTTACCGTCATATGCTCTTTGGAAAACAATCGAAATTTGTATTGGCTCTGGGAAAAAGAAGAAAGAATACATTCAGGGTAGGACGACCTTGACAGATGAACCACTATGCAAACTTTGTCAAACGCCATGCATAGGCAACAATGCCAAGATGCCTCAGTTTTTTGAGGATCTTTTCTGTAACCTTGGATGCTACGATGAATATCGAATTAGGATCAGTAGCAGATCCCTCCGACAGGAGCTTTTTCAAATAGAACACGGTATCTGCTCAAATTGTCATTTGGACTGTCATAAACTTGTGAGGCATATAAAACCTTTATCATTGGCCATGAGGCGAGAATATGTGGAGAAAGTTGCACCAAATGTAGCAAGAAGGAAGAAATTACTCGATAAGCTTGTTGATAATCCAAGTGAGGGAAATGCATGGCATGCAGACCACATTGTTCCTGTCTACCAAGGAGGAGGAGAGTGTCGGTTAGAGAACATGAGGACTCTATGCGTGGCCTGCCATTCTGATGTTACAGCAGCACAAAGCGCTGAACGACGCACGACGAGGCTGAAGGCAAAGAAGCAACTCAAAGTAATTATGAAGCAACTTGTAAAATCCAAAAACATGGAGAGTACCGATTCTAGAATCAAGGATGACGCAATAGAGGATGACCTTTTAGTCAAGGTACCGGGGAGTGCCTACTCAGATGGAAATCACTTAAGCATTGACAGTGAAGACCTAGAAGAATCTTTCAAAGCATAG 2640 40.08 MICQIWLLNLIREIFPSYFLNAFQLTLSIFLGDRRPYDIFHQIDMLWPGLLGKTKYCFAKTYCAVEYVTTAQGKTFQDFSKGIRLEELNVLLKQTVMIRRLKEHVLVELPPKRRQIIRLLLKKSDIIVAKAAVRELHNGHIERSDGETLDKSNDNGKVRMGQLNYQEVGIAKLSGFREWFCIHPLITETDGVVDLDSMSSSQKMIIFAHHHKVLDGVQELVCEKGIGFVRIDGNTLARERQSAVKSFQSSAEVKIAIIGVTAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESLWRSLTKSLQRVSSATNGKYDAIQEIEVDTVSYLKTSDKTETSLGNQLLDVAASDEPSSVNTEPQDKDSVKDVYSTEVHDEVAENINDQSSKLHKNLSCSTKTDMHHEDPNFKVVEVEKSLFLKSEMKENFEAETEKLNRVLSPRSDRLNGGNDQAKKEQNFYDQTEKIHGPAIPRDTNRSYTKDADSLRFEVSQYTGRIHLYTCISGTDMRPRPLFVSFRPEELEILTSDDSEWTEANSLKETSISKNALHEFIEEWNRLRPIEQKKLLGKPLQLPLYVELCYLRENIHHNTNGILKIKSKRRNTPFNEISQPLPSYALWKTIEICIGSGKKKKEYIQGRTTLTDEPLCKLCQTPCIGNNAKMPQFFEDLFCNLGCYDEYRIRISSRSLRQELFQIEHGICSNCHLDCHKLVRHIKPLSLAMRREYVEKVAPNVARRKKLLDKLVDNPSEGNAWHADHIVPVYQGGGECRLENMRTLCVACHSDVTAAQSAERRTTRLKAKKQLKVIMKQLVKSKNMESTDSRIKDDAIEDDLLVKVPGSAYSDGNHLSIDSEDLEESFKA 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41833035 41841710 - Bma008321.1 Bma12g00977 92403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00977 879 SMART helicmild6 215 298 IPR001650 -
Bma12g00977 879 Gene3D - 696 832 - -
Bma12g00977 879 CDD SF2_C_SNF 199 309 - -
Bma12g00977 879 Gene3D - 186 419 IPR027417 -
Bma12g00977 879 MobiDBLite consensus disorder prediction 370 389 - -
Bma12g00977 879 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 34 827 - -
Bma12g00977 879 Pfam Helicase conserved C-terminal domain 198 298 IPR001650 -
Bma12g00977 879 Pfam HNH endonuclease 770 804 IPR002711 GO:0003676|GO:0004519
Bma12g00977 879 MobiDBLite consensus disorder prediction 858 879 - -
Bma12g00977 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 351 IPR027417 -
Bma12g00977 879 CDD HNHc 764 804 IPR003615 -
Bma12g00977 879 SMART HNH_5 739 801 IPR003615 -
Bma12g00977 879 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 34 827 - -
Bma12g00977 879 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 194 351 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00977 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-] - csv:101216304 989.949
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00128 Bma12g00977 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01449 Bma-Chr6:51177064 Bma12g00977 Bma-Chr12:41833035 8.86E-44 dispersed
Bma12g00977 Bma-Chr12:41833035 Bma10g00219 Bma-Chr10:1995174 4.39E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g621 . . . . . . Bma06g00128 Bma12g00977 . . Cma10g00160 . Car10g00202 . . . . Bhi02g00275 . . . . . . . . . . . . . . . . . . . . . . Blo15g00326 . . Bpe07g00767 . . . . . . . . . . . Cpe18g00774 . . . . . . . . . . . . . . . . Chy02g02461 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010723 0 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00977 Bma_Chr12 FPKM 15.29415 15.501021 12.743537 13.440797 19.736084 21.538847 21.295725 17.618088 18.129454 19.074564