Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00978 TTCTGTCCTTTTTTGGGGGTGGGTTTGAATGAGAGAGAAAGCCTAGAGAGAGAAAGAGAGAATCGTCTAAACATGAGTCAGTGCATTGTATCAGATTGGAATCTAAGTCCCAGAAGACAAGAACCAGAAGAAGGAAATAGATCCTCCCACGTGCACTCCTTGCAGAACCACCACCACAGTCTCTCTCCTCACCTTGTCGCTACGTCTGAGCAAGAAATTGCCGAGCTAACATGGGAAAATAGTCAGTCAACCATGCATGGGCTGGGTGGGCTACCTCCATGTCCACCAGCCAAACCTGCGTGGTGTCAGCCAAGTGACACACTAGAGTCCATAGTCATGCAAGCCACATTGCACAAACAAATCCCAGCTCCAAAGCTCCAGGCCCATGTCTGTGCCAGCTCAGCAGCCGCCGACCGGAAATGTGTTCCGCCGGTGGTCGGTAAATGTCCACGTTCGGATGCAGATCAGGGTGGAGGAAATAATATTTGTTGTGGTAGTAGTATGCAAGACGTGAGCACTTGTGCTAGTGCAAGTGCCACGTTTTGCAGGGAGAATGACATTACTTTAATGACAAGGGAATCATTCGAGTCGCCTCGGAGTTTTAAGACAAAAACGACTGAAGACGATTTGGCTTGGCTCAGTCGATCGGAGAAGCAAGAGGAAAAACTCGATACCAAATGCGAAACAGGACGGTCAAACTCCACGAGAAGAAGCCGAGTAGCTGTTGTTCATAATCAATCTGAGAGGAAACGACGAGATAAGATTAACCAGAAGATGAAAGCTCTGCAAAAATTGATCCCCAATGCCTATAAGACCGACAAAGCTTCGATGCTGGATGAGGTGATTGAATACTTGAAACAACTTCAAGCACAAGTCCAGTTGATGAGCATGAGAAATATACTAATGGCTCGTATGGGCATGGGGCTCGGGCTCGGCATCGGTAACATGGCTCGAACCACTCCTCAGCCACTGACTCAGTTTGTTCACCCTACTCCTCCGACGATCATTCCATCTCCTTTTTTGATGCACCCCATGGTTCAGCCACAAGCTAAGCTGGATCCTGCAGCCAATGTTTCTGCTTCCTCTACGATGAACATGGATCTTTATAATAAGATGATGGCAGGGCTATATCGGCAACAGGCGAATCCGAACACACAAGCAGGCAGCAGTCCATCTCAGTCAAACAATGTACAAAGGAACTAG 1203 47.88 FCPFLGVGLNERESLERERENRLNMSQCIVSDWNLSPRRQEPEEGNRSSHVHSLQNHHHSLSPHLVATSEQEIAELTWENSQSTMHGLGGLPPCPPAKPAWCQPSDTLESIVMQATLHKQIPAPKLQAHVCASSAAADRKCVPPVVGKCPRSDADQGGGNNICCGSSMQDVSTCASASATFCRENDITLMTRESFESPRSFKTKTTEDDLAWLSRSEKQEEKLDTKCETGRSNSTRRSRVAVVHNQSERKRRDKINQKMKALQKLIPNAYKTDKASMLDEVIEYLKQLQAQVQLMSMRNILMARMGMGLGLGIGNMARTTPQPLTQFVHPTPPTIIPSPFLMHPMVQPQAKLDPAANVSASSTMNMDLYNKMMAGLYRQQANPNTQAGSSPSQSNNVQRN 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41848692 41850485 + Bma008322.1 Bma12g00978 92404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00978 400 MobiDBLite consensus disorder prediction 34 60 - -
Bma12g00978 400 CDD bHLH_AtPIF_like 239 302 - -
Bma12g00978 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 288 IPR011598 GO:0046983
Bma12g00978 400 Pfam Helix-loop-helix DNA-binding domain 243 289 IPR011598 GO:0046983
Bma12g00978 400 SMART finulus 245 294 IPR011598 GO:0046983
Bma12g00978 400 MobiDBLite consensus disorder prediction 37 51 - -
Bma12g00978 400 Gene3D - 234 299 IPR036638 GO:0046983
Bma12g00978 400 PANTHER TRANSCRIPTION FACTOR PIF7 27 395 - -
Bma12g00978 400 Coils Coil 245 265 - -
Bma12g00978 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 305 IPR036638 GO:0046983
Bma12g00978 400 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 27 395 IPR031066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00978 - - - vvi:100262138 335.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01230 Bma-Chr5:51718965 Bma12g00978 Bma-Chr12:41848692 3.43E-07 dispersed
Bma12g00978 Bma-Chr12:41848692 Bma14g01367 Bma-Chr14:25437288 1.50E-23 dispersed
Bma15g00097 Bma-Chr15:1059794 Bma12g00978 Bma-Chr12:41848692 1.74E-10 dispersed
Bma12g00978 Bma-Chr12:41848692 Bma15g00708 Bma-Chr15:12858643 1.64E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g623 . . . Bda15g00616 . . . Bma12g00978 . . . . Car10g00201 . . . . . . . . . . . . . . . . . . . . . . Lsi02g00102 Csa01g00581 Chy12g01515 Cme12g01961 . Blo15g00325 . . Bpe07g00768 . . . . . . . . . . . Cpe18g00775 Bhi08g01118 . . . . . . Cla04g01172 Cam04g1229 Cec01g1740 Cco01g1786 Clacu04g1256 Cmu04g1235 Cre01g1530 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007472 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58154 PF00010 HLH 3.80E-13 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00978 Bma_Chr12 FPKM 7.594369 7.283948 7.945436 7.908573 4.135713 4.191814 5.071012 8.876459 8.437922 11.162496