Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00984 TTTGCTGCGATGGAGCTGAATTTGGAGAAAGATTGTGGTGGTGGAAATAACAATAAAACTGGAGAAGGTTTTATCGACAGGAGCACAGTGAGAATTCTATTGTGCGATAACGATGCTACGAGTTCTGAAGAGGTCGTCACGCTCCTTTTGAGATGTTCCTATCAGGTGATTTCGGTTAAGTCAGCCAGACAGGTGATTGATGCTTTGAATGCCGAGGGACCAGAAATAGATATTATACTTTCTGAAATTGACATACCAATGGCCAAGGGCATGAAGATGCTGAAGTACATTACTCGAAATAATGATCTCCGTCGCATTCCTGTTATCATGATGTCGGCGCTGGACGAGGTTTCTATTGTCGTGAAATGCTTGAGGCTTGGTGCTGCAGACTATCTTGTGAAGCCTTTACGAACTAATGAACTATTAAACTTGTGGACCCACATGTGGAGGAGAAGGCGCATGCTTGGACTTGCAGAGAAGAGCATGGTTAATTATGAATTTGATCTGGCTGCCTCAGATCCTAGTGATGCTAACACCAACAGTACCACTTTGTTCTCCGACGACACAGATGACAAGTCTTGTAGAGGCGCCAATCCAGAGTTGGCGACAACACTACATCCGGAAAATGAGGTGAGTTCAACACACAAATGGAGTTTAACGCATAAATTTATCAAACTGTGTGATTTATGCTGTTCTTTTCAGTCTTCCATTGTAGCTGAAGATCTTCCATTTACTGATTCTCGAGATTACCGCCCAGTTGTGCCTGGAATTAGCGAACGGAGAACGGGAGGACAACTTTCATGTGGGCCGAAAAAGAGTAAACTCAAGATTGGGGAGTCCTCTGCCTTCTTTACATACGTGAAATCAAACATGCCACAAAGCAATTCTCAAGCAGCCTCCCATGTGGAAGAAGATCCCGACCGACATTCGAGAATGGAAGTGAACCATATGGCATCTGGCGAACATCTTAACGATGCACAAATGGTTGAAAATGGAGATGTCGGAGAAAGCTACTCTCAAGGGGATGACTTTCCGAGCAGTACGAGTTTACCGGATTCACACTCCATCGAGAGGTCTTGCACTCCTCCTGGCAAGATGGAGTTTCTGCAGAGTAATATCAATGAAGACAAGTACTCTAATGGCTCTCAGCTTGATGCTTCTGGGTTGGCTGCTCAATCTGCTTATCCTTTTTATGTTCCGAATCAAATGATGATGCCATCTCCCGCTCATCTTTATCAGAAGAATTTGCATGGTCTGCAAAATCATGCAGCCACAACAATGGTGTCACAGTACAGTCATCCTCATCAGTGCCCTCCTCCTCCTCATGTATCGGGAATGGCATCCTTCGCCTATTATCCTCTCAGTATGTGTTTACAGCCGGGCCAAATTCCGGGTGGGTCTAATTCATGGCAATCCTTGGGAACTTCATCTTCTTCGGCTGAGCTGAACCTAAGTAAAGTGGATAGGAGAGAGGCGGCTCTGATCAAGTTTAGGCAGAAAAGGAAGGAGAGGTGCTTTGATAAGAAGATTCGGTATGTTAATCGAAAAAAACTGGCGGAGAGGAGGCCCCGAGTCCGTGGGCAGTTCGTGAGAAAGTTGAATGGTGTAGATGTTGATCTTAATGGGCAGCCTGCTCCTATTGCAGAGGAAGAAGATGAGGAAGAAGATGAGCAGGTTTCTAGGGATTCCTCCCCAGAAGACGAAGCTTCTGAATATTAA 1719 45.2 FAAMELNLEKDCGGGNNNKTGEGFIDRSTVRILLCDNDATSSEEVVTLLLRCSYQVISVKSARQVIDALNAEGPEIDIILSEIDIPMAKGMKMLKYITRNNDLRRIPVIMMSALDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKSMVNYEFDLAASDPSDANTNSTTLFSDDTDDKSCRGANPELATTLHPENEVSSTHKWSLTHKFIKLCDLCCSFQSSIVAEDLPFTDSRDYRPVVPGISERRTGGQLSCGPKKSKLKIGESSAFFTYVKSNMPQSNSQAASHVEEDPDRHSRMEVNHMASGEHLNDAQMVENGDVGESYSQGDDFPSSTSLPDSHSIERSCTPPGKMEFLQSNINEDKYSNGSQLDASGLAAQSAYPFYVPNQMMMPSPAHLYQKNLHGLQNHAATTMVSQYSHPHQCPPPPHVSGMASFAYYPLSMCLQPGQIPGGSNSWQSLGTSSSSAELNLSKVDRREAALIKFRQKRKERCFDKKIRYVNRKKLAERRPRVRGQFVRKLNGVDVDLNGQPAPIAEEEDEEEDEQVSRDSSPEDEASEY 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41886543 41889987 + Bma008328.1 Bma12g00984 92410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00984 572 MobiDBLite consensus disorder prediction 546 562 - -
Bma12g00984 572 SMART REC_2 30 145 IPR001789 GO:0000160
Bma12g00984 572 Pfam CCT motif 490 532 IPR010402 GO:0005515
Bma12g00984 572 MobiDBLite consensus disorder prediction 333 363 - -
Bma12g00984 572 MobiDBLite consensus disorder prediction 535 572 - -
Bma12g00984 572 Gene3D - 30 215 - -
Bma12g00984 572 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 5 553 - -
Bma12g00984 572 SUPERFAMILY CheY-like 29 156 IPR011006 -
Bma12g00984 572 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 553 IPR045279 GO:0009736
Bma12g00984 572 Pfam Response regulator receiver domain 32 143 IPR001789 GO:0000160
Bma12g00984 572 ProSiteProfiles Response regulatory domain profile. 31 149 IPR001789 GO:0000160
Bma12g00984 572 ProSiteProfiles CCT domain profile. 490 532 IPR010402 GO:0005515
Bma12g00984 572 MobiDBLite consensus disorder prediction 340 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00984 K12127 TOC1, APRR1; pseudo-response regulator 1 - tcc:18604747 694.886
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00984 Bma-Chr12:41886543 Bma07g00742 Bma-Chr7:20021750 1.71E-20 dispersed
Bma14g02030 Bma-Chr14:43603874 Bma12g00984 Bma-Chr12:41886543 7.51E-12 dispersed
Bma12g00984 Bma-Chr12:41886543 Bma10g01320 Bma-Chr10:46835309 2.45E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g587 . . . . . . . Bma12g00984 . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0184 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003640 0 1 1 1 1 1 3 1 1 1 1 1 3 1 1 3 1 2 2 1 1 2 4 2 2 1 2 3 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58156 PF00072 Response_reg 5.30E-17 CL0304 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00984 Bma_Chr12 FPKM 0.304245 0.594706 0.268648 0.15312 0.160506 0.332735 0.205797 0.841588 0.749319 0.6015