Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00994 GATAATGGATCTGAATTTCTCTCTACAAAAATTCAAACATGGTTTCATGAACATGGTATTATTCACCAACGCAGTTGCGTTGCGACCCCACAACAAAATGGCATCGTTGAACGTAAACATCGACATCTACTTGATGTCGCACGAGCTTTACGATTTCAAGCAGATCTACCACTTTCCTTTTGGGGTGAATGCATTCTCACCGCTGCCTTCCTAATCAACAAACTTCCTACACCAATCCTTCGATATAAATCACCTCACCAAGTTTTGCTTGGCACCAGTCCATCCTATTCCTCACTTCGTCTTCCCGGCGACAATGGGTTTGACCCACTTGGTCTAGCAGAGGACCCAGAGAATCTCCGGTGGTTCGTCCAAGCCGAGCTTGTCAATGGCCGGTGGGCAATGCTGGGTGTGGCCGGAATGTTGCTGCCGGAAGTGTTCACCAAGATCGGAATCCTCAACGCACCGAAGTGGTACGACGCCGGAAAATCCGAATACTTCGCATCGTATTCCACTCTTTTTGTGATCGAGTTCATCTTGTTTCACTACGTCGAGATAAGAAGATGGCAAGATATTAAAAACCCAGGAAGTGTAAATCAAGATCCTATCTTCAAGCAGTACAGCTTGCCGCCGAACGAAGTTGGGTATCCCGGCGGCATTTTCAATCCTCTCAACTTCGCCGCAACCCTCGAAGCCAAAGAGAAGGAGATTGCCAATGGGAGATTGGCGATGTTGGCATTTTTAGGGTTTGTGATTCAGCACAACGTGACAGGACAAGGGCCATTCGACAACCTTTTACAGCACCTATCGGATCCATGGCACAACAGCATTGTCCAGACGCTTGGTCAGTAG 849 47.7 DNGSEFLSTKIQTWFHEHGIIHQRSCVATPQQNGIVERKHRHLLDVARALRFQADLPLSFWGECILTAAFLINKLPTPILRYKSPHQVLLGTSPSYSSLRLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGILNAPKWYDAGKSEYFASYSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAATLEAKEKEIANGRLAMLAFLGFVIQHNVTGQGPFDNLLQHLSDPWHNSIVQTLGQ 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42023138 42026867 + Bma008341.1 Bma12g00994 92420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00994 282 Pfam Chlorophyll A-B binding protein 95 253 IPR022796 -
Bma12g00994 282 SUPERFAMILY Ribonuclease H-like 1 100 IPR012337 -
Bma12g00994 282 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 92 280 - -
Bma12g00994 282 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 92 280 IPR001344 GO:0009765|GO:0016020
Bma12g00994 282 SUPERFAMILY Chlorophyll a-b binding protein 86 280 - -
Bma12g00994 282 Gene3D - 1 94 IPR036397 GO:0003676
Bma12g00994 282 Gene3D Chlorophyll a/b binding protein domain 95 273 - -
Bma12g00994 282 ProSiteProfiles Integrase catalytic domain profile. 1 93 IPR001584 GO:0015074
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00227 Bma12g00994 CCT
Bma08g00227 Bma12g00994 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00275 Bma-Chr10:2490354 Bma12g00994 Bma-Chr12:42023138 1.35E-68 dispersed
Bma12g00994 Bma-Chr12:42023138 Bma14g00718 Bma-Chr14:7896141 1.89E-45 dispersed
Bma12g00987 Bma-Chr12:41910555 Bma12g00994 Bma-Chr12:42023138 1.55E-126 wgd
Bma12g00994 Bma-Chr12:42023138 Bma08g00227 Bma-Chr8:2793852 1.98E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00994 K08910 - rcu:8263414 366.311