Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01006 ATGGGCAATATACTCTGTTGTGTACAAGTAGACCAATCGACAGTAGCTATCAGGGAGCGATTTGGAAAATACGAGGAAGTTTTGGAGCCAGGATGCCATTGCATGCCTTGGTTTTTAGGAGTTCAGGTCGCTGGTCACCTCTCTCTTCGGTTGCAGCAATTGGATGTCAAATGTGAAACCAAGACAAAGGACAATGTGTTTGTAAATGTGGTTGCCTCGATTCAATATCGGGCTTTGTCTGATAAAGCCAGCGATGCTTTTTACAAACTCAGCAACACCAGATCTCAGATCCAGGCCTATGTCTTCGATGTTATTAGAGCAAGTGTTCCAAAGCTGAACTTGGATGATACTTTTGAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGATGAACTCGAAAAGGCTATGTCTGCCTATGGGTTTGAGATTGTGCAAACTCTCATTGTCGACATAGAGCCTGATGAACATGTGAAGCGAGCAATGAATGAAATAAATGCAGCTGCACGACTAAGAGTTGCAGCCAATGAGAAGGCGGAGGCTGAGAAAATCCTACAGATTAAACGAGCAGAGGGAGAGGCCGAGGCAAAATATCTCTCTGGACTGGGTATCGCTAGGCAACGACAAGCAATCGTGGACGGATTAAGAGACAGTGTTCTGGGTTTCTCTGTGAACGTTCCCGGAACAACTGCAAAAGACGTAATGGACATGGTGCTAGTGACCCAATATTTTGACACCATGAAAGAAATTGGAGCCGCCTCAAAGTCCTCCGCCGTGTTCATCCCACACGGCCCTGGTGCTGTTCGGGATGTTGCTGCTCAGATCCGTGATGGGCTTCTTCAGGGCTCTGCTTCCCAGCAGTAG 861 46.69 MGNILCCVQVDQSTVAIRERFGKYEEVLEPGCHCMPWFLGVQVAGHLSLRLQQLDVKCETKTKDNVFVNVVASIQYRALSDKASDAFYKLSNTRSQIQAYVFDVIRASVPKLNLDDTFEQKNEIAKAVEDELEKAMSAYGFEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVAAQIRDGLLQGSASQQ 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42144177 42145739 - Bma008354.1 Bma12g01006 92432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01006 286 SMART PHB_4 5 165 IPR001107 -
Bma12g01006 286 Pfam SPFH domain / Band 7 family 9 182 IPR001107 -
Bma12g01006 286 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 1 283 - -
Bma12g01006 286 Gene3D Band 7 domain 40 167 IPR036013 -
Bma12g01006 286 Coils Coil 118 138 - -
Bma12g01006 286 Coils Coil 157 190 - -
Bma12g01006 286 CDD SPFH_like_u4 10 278 - -
Bma12g01006 286 PANTHER HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 3 1 283 - -
Bma12g01006 286 SUPERFAMILY Band 7/SPFH domain 45 171 IPR036013 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01006 - - - twl:120016656 530.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00211 Bma12g01006 CCT
Bma08g00211 Bma12g01006 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00358 Bma-Chr8:7310937 Bma12g01006 Bma-Chr12:42144177 4.27E-122 dispersed
Bma10g01324 Bma-Chr10:46882094 Bma12g01006 Bma-Chr12:42144177 6.82E-09 dispersed
Bma01g00082 Bma-Chr1:810786 Bma12g01006 Bma-Chr12:42144177 0 wgd
Bma12g01006 Bma-Chr12:42144177 Bma08g00204 Bma-Chr8:2453922 0 wgd
Bma12g01006 Bma-Chr12:42144177 Bma08g00211 Bma-Chr8:2610009 1.23E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g504 . . Bda06g00554 Bda15g00593 Bpe12g00557 . . Bma12g01006 . . . Cma11g00163 . Car11g00137 Sed08g1721 . Cpe04g01515 Bhi02g00346 Tan09g2160 Cmetu03g0832 . Hepe09g0137 . . Cla06g01607 Cam06g1781 Cec06g1832 Cco06g1841 Clacu06g1743 Cmu06g1688 Cre06g2504 . . . . . . . . Blo13g00022 . . . Bpe07g00795 . . Bma08g00211 . . Cmo11g00147 . . . . . . . . . . . . . . . . . . . . Lsi06g01485 . Chy02g02517 Cme02g01904
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000975 3 4 3 4 3 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 3 2 3 2 2 2 8 6 2 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01006 Bma_Chr12 FPKM 24.188976 26.614962 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0