Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01007 ATGGCTGCGTGCGTGAAACACGCGGCGCGTGTAATGGTGGAACGGGGTGTGAGGGGGAGCATTGTGTGCACCGGAAGTGTAGCCGCCACACGCGGTGGCGAACGAAGGACGGATTACTGTATGTCGAAGCACGCCGTGTTAGGGCTGGTTCGATCTGCTAGCGTACAGCTTGCGAAGCACGGGATTAGAGTGAACTGCGTGTCGCCGAATGCGTTGGCGACGCCATTGACGGTTCAGGCTCTCGGGATGGGAATGGAAGAGGTTGAGAAGGTGTACGAGCAATACGCGAGGTTGAAAGGCGTGGTGTTGAGACCGAGAAACATCGCCGACGCGGTGCTATTTCTCGCTTCCGGTGATTCTGAGTTTGTTACCGGCCACGATCTCGTCGTCGACGGCGGATTCTGCGCTGGTACTGCCTGA 420 58.1 MAACVKHAARVMVERGVRGSIVCTGSVAATRGGERRTDYCMSKHAVLGLVRSASVQLAKHGIRVNCVSPNALATPLTVQALGMGMEEVEKVYEQYARLKGVVLRPRNIADAVLFLASGDSEFVTGHDLVVDGGFCAGTA 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42163574 42163993 - Bma008355.1 Bma12g01007 92433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01007 139 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 1 134 - -
Bma12g01007 139 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 136 IPR036291 -
Bma12g01007 139 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 26 54 IPR020904 GO:0016491
Bma12g01007 139 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B-LIKE 1 134 - -
Bma12g01007 139 Gene3D - 1 137 - -
Bma12g01007 139 PRINTS Glucose/ribitol dehydrogenase family signature 98 118 IPR002347 -
Bma12g01007 139 PRINTS Glucose/ribitol dehydrogenase family signature 60 77 IPR002347 -
Bma12g01007 139 PRINTS Glucose/ribitol dehydrogenase family signature 39 58 IPR002347 -
Bma12g01007 139 PRINTS Glucose/ribitol dehydrogenase family signature 13 29 IPR002347 -
Bma12g01007 139 Pfam Enoyl-(Acyl carrier protein) reductase 2 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01007 - - - cit:102608734 200.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01007 Bma-Chr12:42163574 Bma04g01557 Bma-Chr4:51579941 2.20E-40 dispersed
Bma12g01007 Bma-Chr12:42163574 Bma01g01991 Bma-Chr1:74033278 6.36E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g496 . . . . . . . Bma12g01007 . . . . Car10g00168 . . . . . . . . . . . . . . . . . . . . Cone13ag0088 Cone19ag0091 . . . . . Blo15g00305 . . . . . . Sed08g2640 Cmo10g00197 . . . . . . . Bhi08g01181 Tan05g2690 Cmetu03g1526 . Hepe07g1730 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014675 1 0 2 1 1 0 1 0 0 0 0 0 0 0 0 1 0 2 0 0 0 4 0 1 1 0 0 0 1 3 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01007 Bma_Chr12 FPKM 0.368647 0.428447 0.359145 0.249793 0.0 0.0 0.0 1.642231 0.925312 0.810374