Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma12g01008 | ATGGGGCATAAGAAGAAAAACGCGGCTCCGCGTTCGAAAAGATCCGAGGCGGCTTCTCCGGCGGCTCAAGTTGCTTCCGGTGGAGCCGCCGGCGATGCTGTGAGTATCTTAAAGTCAGACCCTTGCTTGCAACCTAACGACCACAATAATATGAGCCTTCATAATCACGACCAAGGTGAGGTCGAATCTGGGGCTATGATTGAGTCGAACAGTTCATCCGTTGTTAAACTAGAATGTGAGCGTGCACTCAACGCCCTCAGGCGAGGGAGCCACAATAGGGCTCTCAAGTTGATGAAGGACGCTTGCTTGAGGCATGAAAATTCGGCTTTGATTCACCGGGTTCTGGGAACTGTTTGTGTCAAAGTGGCGTCAATTATTGACGATTCACATACAAAGCAGCGGCATTTGAAGAATGCGATTGAGTCAGCTCATAAAGCAGTTGAACTCTCACCAAACTCAATTGAGTTTGCGCACTTCTATGCTAATTTGCTGTATGAGGTAGCAAATGAGGGGAAGGAGTACGAAGAAGTGGTGCAAGAGTGTGAACGAGCACTTGGAATTGAAAATCCAATCGATCCTGCAAGGGAGAGCTTGCAGGATGAGAGTCAGCAGAAGATATCCACTGCTGAAGGTCGTATTTCTCATGTGCAAAGTGAATTGCGGCAGCTTATTCAGAAGTCCAACATTGCTTCTCTATCAACATGGATGAAGAACTTCGGAAATGGGGAGGAGAAATTTCGGTTGATTCCTATCAGAAGAGTTGCTGAAGACCCCATGGAAGTTAAGTTGGTTCAGGCTAAGCGGCCAAATGAGATAAAGAAGGCAAATAAAACTCCTGAGGAGCGGAGGAAGGAGATTGAAGTTCGTGTTGCTGCTGCAAAACTTCTGCAGCAGAAATCTGAGACATCTCAAATTCAAAATGATGGAGATAAGAACGATATACCTTCAGGGTCTGGACAGAGATCAGGCGAGCGGAGGAAGCACGGTAATTTAAGGAAACAGGGATCTTCAGGTGAAAGAAAGGATAGGGTTCAGTTGTATTGGAAGTCCTTGAGTATTGACTCAAAGACAGACTTGCTTAGGGTCAAGATAAATGATCTTAAGGAGCATTTCAATTCTTCTAAGGACGGTTCAGCAGCTAAAGTACTATCTGAATTGTCTTTTTGTGAGGCCAATAAATCGTGGAAGTTCTGGGTTTGCTGCCGATGTTATGAGAAATTTTCAGATTCTGAATCTCATATGCAACATGTAGTGCAGGAGCACATGGGAAATCTCTTGCCCAAAATGCAGTCAATTTTGCCAAAGAATGTTGACAATGAGTGGATTGAGATGATTCATGGTTGCCCTTGGAGACCATTGGATGTCTCAGCTTCTGTGAAAATGCTTACTAGTAAAACACTAGACAAAGATGCTAAACTTGTTGAAGATTTATGCTCAAAATATCAAACCGAGGATTGTGGTAACTACTTAAAAAATGAGCAGGATTCATCTCCAGAGAAAGGAAGTTCAGAGAATAGTTGCATAAATAATACTTTTGAAAGAAATAACTGTGGGGAAAAGACTGACATGGAGTGCGGAAATTTCCACGAAGATCAGGGGCCTATGGAATATTCTTTGCCTGATAGCTGGCCTACATCTGATGATTCAGATCGTTCCAAGCTTCTTGAAAAAATTCATGCCATATTTGAGTTGCTTATTAGTCATAAATATCTTGCTGAAAGCCATCTGAAAAAGGTTATTCAGTTTACAATGGATGAGCTTCTGGGTCTTCCATCTGGCTCTTATCTTCTAAACCATGGTCTGGACCAAACACCGATTTGCATATGCTTTTTGGGAGCTTTACAGCTTAAGAAAATCCTCAAATACTTGCAAGAATTATCTCATTCTTGCGGTTTGGACAGATATTCTGAAAAGTGTAATAATTGTATAAATGATGTCAACAATGGTCTACAAGTCACTGAGACTAAAGACAAAATTTTTTTGAAAGGTGATGGGTCATATCTTCTTCTTGATGGTTGCCTAATGTCAGATGTTGGCCTTACTGGTACTATCAACCCTACTGCTGCTGAGAACGTTGCTGATTTGACTTCTGTGAAGAGTATAAATGGAAACTGGATTCTGCCTGATGTGGATGCAATCTTGTCCTACATTTTTGTTGGCCCTTCAAGTGAGGAAGATCTAGCATCATGGCTACGTACAAAGGAAGAAAAAATAAAGGAAGGCAGAGAAATTCTCCAAATGCTGGAGAAGGAATTTTACCACCTGCAGAGTCTTTGTGAGAGAAAATGTGAACATATAAGCTATGAAGGCGCATTACAAGCAGTTGAGGATCTTTGTCTTGAAGAAGGTAAGAAGAGGGAGAATGTGACTGACTTTGTTCATCAAAGCTACGAGTCTGTCCTCAGAAAGCGAAGAGAAGAGTTTGTTCAATCAGAAAATGATGGGATGTTTCTTGGCAATAGGTTTGAGTTGGATGCTTTGACAAATGTTTTGAAAGAAGCCGAAGCTCTTAATGCCAATCAATTTGGATATGAAGAGACTCATGCAGGATTGACTTCTCAGTTCTGTGACCTGGAATCTGGGGAAAATGAATATTGGAGGGCTAAAGACTATTTTCATCAAGTTGATACTTGTATAGAAGTTGCAATTCAACGGCAAAAAGAACAATTATCTATAGAGATTAGCAAAATTGATGCACAGATTATGAAAAATGTTACTGAAATGCAGCATTTGGAACTCAAGCTTGAGCCTGTTTGTTCTCATGATTATCAGTCAATACTATTGCCTTTTGTGAAATCGTACTTGAGGGCTAAATTGGAGGATCTGGCTGTGAAAGACGCCACACAAAAATCTGATGCTGCAAGAGAAGCTTTTCTGGCAGAACTTGAGCGTGATTCTAAGAAAGGTGCGAGTCGAGGAAATGATAATTTGAAACAGGAGAAGACAAAAGACAAGAAAAAACACAAGGAATCTAAAAAAGCAAAAGATTCTAAGAATTTTGGTGGTTGTGAAGAAGATATAATTCATCACGAGATTTCTGGGCAAGGCTTGTTTTCCCTTCAGTCTGATGATGGCGATAATCTAGATTCAGATGCTGCTGTATCTGAAAATGCTGATGATTTGAAACTTCAGGAAGAGGAATTTAGACAGAAAATTGAGCTTGAAGCTGAAGAAAGAAAGCTTGAAGAGACTTTAGAATATCAAAGGCGAATCGAGGAGGAAGCTAAGCAGAAGCATCTTGCTGAGCAACACAAAAAATCTGCTCAGACATATACAGAAGATAATATTGCAGAACAACTCGTGGAAGACAATGCATTTCACCAAAAATTTGAATGCTCTCCCATGAATGGTGTTCCAACGGCATTGAGAGTTAATGATGCCTTGGATGCCCAAAATCCTAGTGATAAACAAGGATTACTTAATGGAAAAATTTCTGAGAACTGTCTCCCACCTTATGATCGACGGACTGGAAGAAAAGGTAGACGATCTAAGGGTTCTGCTAAATTGGTCAATGGACAGTATAAAACCATGACATCTGACAAGGATAATTGTGATTTAGAAGTAAGGATTTCACAACTTGATAATCACGTAAAAGAGCCAGAAATATTTCCTGGCAATCCCCTGGCAGACAGTGTTACTTCTAATTGGGAAGATAATGGTATAACCACATTAAGTCACGTTCAAGTGGAGGACTATGAGGAAGAAAGGTTCCAGGCCGATCTTAAAAAGGCTGTAATCCAAAGCCTCGATACATTCCAGGCACGACAGAAGATGCCAACAGTTTCAGGAGTGAGAAAATCACGTACGACTTCTGCTGAAGTGAATCACATTGATATTTCATCTAGTGATGTAAATGGAGAAATTGCAAAGAGAACAGATGTATTTGGTACAGGACTGAAGAATGAAGTTGGTGAATATAATTGCTTTCTCAATGTCATTATCCAATCCTTATGGCACTTAAGACTGTTTCGAGATGAGTTCCTGAGAAGATCTACAATTGAACATGTTCATGTGGGAGATCCTTGTGTTGTCTGTGCATTATATGAAATCTTCAGCTCCCTGAGCATTGCATCTACCGACTCTAGTCAACAAGAACCAGTTGCCCCTACTTCTCTGAGAATGGCTCTTAGCAACCTCTATCCTGATAGTAACTTCTTTCAGGAGGGTCAGATGAATGATGCTTCGGAGGTCCTGGCAGTGATATTTTCCTGCCTTCACCAAGCGTTTACTTCTACTAGTATACAGGCTTCTGATGCTAAACTAGTTGAAATAAATAGCATGGGTTCTTGGGATTGTGCAAATGATGTTTGTCTAGTGCATTCTATTTTTGGCATGGACATTTTTGAACGAATGAACTGTTTCAGCTGTGGACTTGAGTCCAGACATCTAAAGTACACTTCCTTCTTCCACAATATAAACGCAAGTGCCCTCCGTACGACAAAGGTTTTGTGTGCAGAAAGCTCGTTTGATGAGCTTTTAAATGTAGTTGAAATGAACCATCAGGTAGCCTGTGATGTAGAGGCTGGTGGATGTGGAAAGCTCAACTATATCCATCACTTTCTTGCTTCTCCACCACATGTCTTCACAACAGTTTTGGGTTGGCAGAAAACATGTGAGAGTGTTGATGACATAACAGCAACATTATCTTCGCTAAGTACTGAGATAGATATTGGGGTCCTTTATCGTGGTCTAGATCCAAAAAATACTCGCACTTTGGTCTCTGTGGTTTGCTACTATGGGCAACATTATCACTGCTTTGCATACAGTCATGAGCATGAATGTTGGATAATGTATGATGATAAAACTGTTAAGGTTATTGGGAGCTGGGCTGAAGTACTCACCATGTGTGAAAGAGGGCATTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTAG | 4899 | 40.85 | MGHKKKNAAPRSKRSEAASPAAQVASGGAAGDAVSILKSDPCLQPNDHNNMSLHNHDQGEVESGAMIESNSSSVVKLECERALNALRRGSHNRALKLMKDACLRHENSALIHRVLGTVCVKVASIIDDSHTKQRHLKNAIESAHKAVELSPNSIEFAHFYANLLYEVANEGKEYEEVVQECERALGIENPIDPARESLQDESQQKISTAEGRISHVQSELRQLIQKSNIASLSTWMKNFGNGEEKFRLIPIRRVAEDPMEVKLVQAKRPNEIKKANKTPEERRKEIEVRVAAAKLLQQKSETSQIQNDGDKNDIPSGSGQRSGERRKHGNLRKQGSSGERKDRVQLYWKSLSIDSKTDLLRVKINDLKEHFNSSKDGSAAKVLSELSFCEANKSWKFWVCCRCYEKFSDSESHMQHVVQEHMGNLLPKMQSILPKNVDNEWIEMIHGCPWRPLDVSASVKMLTSKTLDKDAKLVEDLCSKYQTEDCGNYLKNEQDSSPEKGSSENSCINNTFERNNCGEKTDMECGNFHEDQGPMEYSLPDSWPTSDDSDRSKLLEKIHAIFELLISHKYLAESHLKKVIQFTMDELLGLPSGSYLLNHGLDQTPICICFLGALQLKKILKYLQELSHSCGLDRYSEKCNNCINDVNNGLQVTETKDKIFLKGDGSYLLLDGCLMSDVGLTGTINPTAAENVADLTSVKSINGNWILPDVDAILSYIFVGPSSEEDLASWLRTKEEKIKEGREILQMLEKEFYHLQSLCERKCEHISYEGALQAVEDLCLEEGKKRENVTDFVHQSYESVLRKRREEFVQSENDGMFLGNRFELDALTNVLKEAEALNANQFGYEETHAGLTSQFCDLESGENEYWRAKDYFHQVDTCIEVAIQRQKEQLSIEISKIDAQIMKNVTEMQHLELKLEPVCSHDYQSILLPFVKSYLRAKLEDLAVKDATQKSDAAREAFLAELERDSKKGASRGNDNLKQEKTKDKKKHKESKKAKDSKNFGGCEEDIIHHEISGQGLFSLQSDDGDNLDSDAAVSENADDLKLQEEEFRQKIELEAEERKLEETLEYQRRIEEEAKQKHLAEQHKKSAQTYTEDNIAEQLVEDNAFHQKFECSPMNGVPTALRVNDALDAQNPSDKQGLLNGKISENCLPPYDRRTGRKGRRSKGSAKLVNGQYKTMTSDKDNCDLEVRISQLDNHVKEPEIFPGNPLADSVTSNWEDNGITTLSHVQVEDYEEERFQADLKKAVIQSLDTFQARQKMPTVSGVRKSRTTSAEVNHIDISSSDVNGEIAKRTDVFGTGLKNEVGEYNCFLNVIIQSLWHLRLFRDEFLRRSTIEHVHVGDPCVVCALYEIFSSLSIASTDSSQQEPVAPTSLRMALSNLYPDSNFFQEGQMNDASEVLAVIFSCLHQAFTSTSIQASDAKLVEINSMGSWDCANDVCLVHSIFGMDIFERMNCFSCGLESRHLKYTSFFHNINASALRTTKVLCAESSFDELLNVVEMNHQVACDVEAGGCGKLNYIHHFLASPPHVFTTVLGWQKTCESVDDITATLSSLSTEIDIGVLYRGLDPKNTRTLVSVVCYYGQHYHCFAYSHEHECWIMYDDKTVKVIGSWAEVLTMCERGHLQPQVLFFEAVN | 1632 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 42171855 | 42178864 | + | Bma008356.2 | Bma12g01008 | 92434 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma12g01008 | 1632 | Coils | Coil | 974 | 994 | - | - | |
Bma12g01008 | 1632 | Coils | Coil | 206 | 226 | - | - | |
Bma12g01008 | 1632 | PANTHER | INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE | 1 | 1632 | - | - | |
Bma12g01008 | 1632 | Pfam | Ubiquitin carboxyl-terminal hydrolase | 1298 | 1627 | IPR001394 | GO:0004843|GO:0016579 | |
Bma12g01008 | 1632 | MobiDBLite | consensus disorder prediction | 964 | 984 | - | - | |
Bma12g01008 | 1632 | MobiDBLite | consensus disorder prediction | 320 | 338 | - | - | |
Bma12g01008 | 1632 | Pfam | Protein of unknown function (DUF627) | 81 | 188 | IPR006866 | - | |
Bma12g01008 | 1632 | MobiDBLite | consensus disorder prediction | 964 | 1001 | - | - | |
Bma12g01008 | 1632 | Gene3D | Cysteine proteinases | 1283 | 1632 | - | - | |
Bma12g01008 | 1632 | PANTHER | UBIQUITIN SPECIFIC PROTEINASE | 1 | 1632 | - | - | |
Bma12g01008 | 1632 | SUPERFAMILY | Cysteine proteinases | 1297 | 1629 | IPR038765 | - | |
Bma12g01008 | 1632 | MobiDBLite | consensus disorder prediction | 1133 | 1167 | - | - | |
Bma12g01008 | 1632 | MobiDBLite | consensus disorder prediction | 297 | 319 | - | - | |
Bma12g01008 | 1632 | Coils | Coil | 731 | 751 | - | - | |
Bma12g01008 | 1632 | CDD | Peptidase_C19 | 1390 | 1629 | - | - | |
Bma12g01008 | 1632 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 400 | 421 | IPR013087 | - | |
Bma12g01008 | 1632 | ProSiteProfiles | Ubiquitin specific protease (USP) domain profile. | 1297 | 1631 | IPR028889 | - | |
Bma12g01008 | 1632 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Bma12g01008 | 1632 | SUPERFAMILY | TPR-like | 81 | 187 | IPR011990 | GO:0005515 | |
Bma12g01008 | 1632 | Gene3D | Tetratricopeptide repeat domain | 65 | 210 | IPR011990 | GO:0005515 | |
Bma12g01008 | 1632 | Pfam | Protein of unknown function (DUF629) | 343 | 881 | IPR006865 | - | |
Bma12g01008 | 1632 | MobiDBLite | consensus disorder prediction | 297 | 338 | - | - | |
Bma12g01008 | 1632 | Coils | Coil | 1038 | 1074 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma08g00201 | Bma12g01008 | CCT | |
Bma08g00201 | Bma12g01008 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma12g01008 | Bma-Chr12:42171855 | Bma08g00201 | Bma-Chr8:2384899 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma12g01008 | - | - | mcha:111007268 | 2009.96 |