Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01008 ATGGGGCATAAGAAGAAAAACGCGGCTCCGCGTTCGAAAAGATCCGAGGCGGCTTCTCCGGCGGCTCAAGTTGCTTCCGGTGGAGCCGCCGGCGATGCTGTGAGTATCTTAAAGTCAGACCCTTGCTTGCAACCTAACGACCACAATAATATGAGCCTTCATAATCACGACCAAGGTGAGGTCGAATCTGGGGCTATGATTGAGTCGAACAGTTCATCCGTTGTTAAACTAGAATGTGAGCGTGCACTCAACGCCCTCAGGCGAGGGAGCCACAATAGGGCTCTCAAGTTGATGAAGGACGCTTGCTTGAGGCATGAAAATTCGGCTTTGATTCACCGGGTTCTGGGAACTGTTTGTGTCAAAGTGGCGTCAATTATTGACGATTCACATACAAAGCAGCGGCATTTGAAGAATGCGATTGAGTCAGCTCATAAAGCAGTTGAACTCTCACCAAACTCAATTGAGTTTGCGCACTTCTATGCTAATTTGCTGTATGAGGTAGCAAATGAGGGGAAGGAGTACGAAGAAGTGGTGCAAGAGTGTGAACGAGCACTTGGAATTGAAAATCCAATCGATCCTGCAAGGGAGAGCTTGCAGGATGAGAGTCAGCAGAAGATATCCACTGCTGAAGGTCGTATTTCTCATGTGCAAAGTGAATTGCGGCAGCTTATTCAGAAGTCCAACATTGCTTCTCTATCAACATGGATGAAGAACTTCGGAAATGGGGAGGAGAAATTTCGGTTGATTCCTATCAGAAGAGTTGCTGAAGACCCCATGGAAGTTAAGTTGGTTCAGGCTAAGCGGCCAAATGAGATAAAGAAGGCAAATAAAACTCCTGAGGAGCGGAGGAAGGAGATTGAAGTTCGTGTTGCTGCTGCAAAACTTCTGCAGCAGAAATCTGAGACATCTCAAATTCAAAATGATGGAGATAAGAACGATATACCTTCAGGGTCTGGACAGAGATCAGGCGAGCGGAGGAAGCACGGTAATTTAAGGAAACAGGGATCTTCAGGTGAAAGAAAGGATAGGGTTCAGTTGTATTGGAAGTCCTTGAGTATTGACTCAAAGACAGACTTGCTTAGGGTCAAGATAAATGATCTTAAGGAGCATTTCAATTCTTCTAAGGACGGTTCAGCAGCTAAAGTACTATCTGAATTGTCTTTTTGTGAGGCCAATAAATCGTGGAAGTTCTGGGTTTGCTGCCGATGTTATGAGAAATTTTCAGATTCTGAATCTCATATGCAACATGTAGTGCAGGAGCACATGGGAAATCTCTTGCCCAAAATGCAGTCAATTTTGCCAAAGAATGTTGACAATGAGTGGATTGAGATGATTCATGGTTGCCCTTGGAGACCATTGGATGTCTCAGCTTCTGTGAAAATGCTTACTAGTAAAACACTAGACAAAGATGCTAAACTTGTTGAAGATTTATGCTCAAAATATCAAACCGAGGATTGTGGTAACTACTTAAAAAATGAGCAGGATTCATCTCCAGAGAAAGGAAGTTCAGAGAATAGTTGCATAAATAATACTTTTGAAAGAAATAACTGTGGGGAAAAGACTGACATGGAGTGCGGAAATTTCCACGAAGATCAGGGGCCTATGGAATATTCTTTGCCTGATAGCTGGCCTACATCTGATGATTCAGATCGTTCCAAGCTTCTTGAAAAAATTCATGCCATATTTGAGTTGCTTATTAGTCATAAATATCTTGCTGAAAGCCATCTGAAAAAGGTTATTCAGTTTACAATGGATGAGCTTCTGGGTCTTCCATCTGGCTCTTATCTTCTAAACCATGGTCTGGACCAAACACCGATTTGCATATGCTTTTTGGGAGCTTTACAGCTTAAGAAAATCCTCAAATACTTGCAAGAATTATCTCATTCTTGCGGTTTGGACAGATATTCTGAAAAGTGTAATAATTGTATAAATGATGTCAACAATGGTCTACAAGTCACTGAGACTAAAGACAAAATTTTTTTGAAAGGTGATGGGTCATATCTTCTTCTTGATGGTTGCCTAATGTCAGATGTTGGCCTTACTGGTACTATCAACCCTACTGCTGCTGAGAACGTTGCTGATTTGACTTCTGTGAAGAGTATAAATGGAAACTGGATTCTGCCTGATGTGGATGCAATCTTGTCCTACATTTTTGTTGGCCCTTCAAGTGAGGAAGATCTAGCATCATGGCTACGTACAAAGGAAGAAAAAATAAAGGAAGGCAGAGAAATTCTCCAAATGCTGGAGAAGGAATTTTACCACCTGCAGAGTCTTTGTGAGAGAAAATGTGAACATATAAGCTATGAAGGCGCATTACAAGCAGTTGAGGATCTTTGTCTTGAAGAAGGTAAGAAGAGGGAGAATGTGACTGACTTTGTTCATCAAAGCTACGAGTCTGTCCTCAGAAAGCGAAGAGAAGAGTTTGTTCAATCAGAAAATGATGGGATGTTTCTTGGCAATAGGTTTGAGTTGGATGCTTTGACAAATGTTTTGAAAGAAGCCGAAGCTCTTAATGCCAATCAATTTGGATATGAAGAGACTCATGCAGGATTGACTTCTCAGTTCTGTGACCTGGAATCTGGGGAAAATGAATATTGGAGGGCTAAAGACTATTTTCATCAAGTTGATACTTGTATAGAAGTTGCAATTCAACGGCAAAAAGAACAATTATCTATAGAGATTAGCAAAATTGATGCACAGATTATGAAAAATGTTACTGAAATGCAGCATTTGGAACTCAAGCTTGAGCCTGTTTGTTCTCATGATTATCAGTCAATACTATTGCCTTTTGTGAAATCGTACTTGAGGGCTAAATTGGAGGATCTGGCTGTGAAAGACGCCACACAAAAATCTGATGCTGCAAGAGAAGCTTTTCTGGCAGAACTTGAGCGTGATTCTAAGAAAGGTGCGAGTCGAGGAAATGATAATTTGAAACAGGAGAAGACAAAAGACAAGAAAAAACACAAGGAATCTAAAAAAGCAAAAGATTCTAAGAATTTTGGTGGTTGTGAAGAAGATATAATTCATCACGAGATTTCTGGGCAAGGCTTGTTTTCCCTTCAGTCTGATGATGGCGATAATCTAGATTCAGATGCTGCTGTATCTGAAAATGCTGATGATTTGAAACTTCAGGAAGAGGAATTTAGACAGAAAATTGAGCTTGAAGCTGAAGAAAGAAAGCTTGAAGAGACTTTAGAATATCAAAGGCGAATCGAGGAGGAAGCTAAGCAGAAGCATCTTGCTGAGCAACACAAAAAATCTGCTCAGACATATACAGAAGATAATATTGCAGAACAACTCGTGGAAGACAATGCATTTCACCAAAAATTTGAATGCTCTCCCATGAATGGTGTTCCAACGGCATTGAGAGTTAATGATGCCTTGGATGCCCAAAATCCTAGTGATAAACAAGGATTACTTAATGGAAAAATTTCTGAGAACTGTCTCCCACCTTATGATCGACGGACTGGAAGAAAAGGTAGACGATCTAAGGGTTCTGCTAAATTGGTCAATGGACAGTATAAAACCATGACATCTGACAAGGATAATTGTGATTTAGAAGTAAGGATTTCACAACTTGATAATCACGTAAAAGAGCCAGAAATATTTCCTGGCAATCCCCTGGCAGACAGTGTTACTTCTAATTGGGAAGATAATGGTATAACCACATTAAGTCACGTTCAAGTGGAGGACTATGAGGAAGAAAGGTTCCAGGCCGATCTTAAAAAGGCTGTAATCCAAAGCCTCGATACATTCCAGGCACGACAGAAGATGCCAACAGTTTCAGGAGTGAGAAAATCACGTACGACTTCTGCTGAAGTGAATCACATTGATATTTCATCTAGTGATGTAAATGGAGAAATTGCAAAGAGAACAGATGTATTTGGTACAGGACTGAAGAATGAAGTTGGTGAATATAATTGCTTTCTCAATGTCATTATCCAATCCTTATGGCACTTAAGACTGTTTCGAGATGAGTTCCTGAGAAGATCTACAATTGAACATGTTCATGTGGGAGATCCTTGTGTTGTCTGTGCATTATATGAAATCTTCAGCTCCCTGAGCATTGCATCTACCGACTCTAGTCAACAAGAACCAGTTGCCCCTACTTCTCTGAGAATGGCTCTTAGCAACCTCTATCCTGATAGTAACTTCTTTCAGGAGGGTCAGATGAATGATGCTTCGGAGGTCCTGGCAGTGATATTTTCCTGCCTTCACCAAGCGTTTACTTCTACTAGTATACAGGCTTCTGATGCTAAACTAGTTGAAATAAATAGCATGGGTTCTTGGGATTGTGCAAATGATGTTTGTCTAGTGCATTCTATTTTTGGCATGGACATTTTTGAACGAATGAACTGTTTCAGCTGTGGACTTGAGTCCAGACATCTAAAGTACACTTCCTTCTTCCACAATATAAACGCAAGTGCCCTCCGTACGACAAAGGTTTTGTGTGCAGAAAGCTCGTTTGATGAGCTTTTAAATGTAGTTGAAATGAACCATCAGGTAGCCTGTGATGTAGAGGCTGGTGGATGTGGAAAGCTCAACTATATCCATCACTTTCTTGCTTCTCCACCACATGTCTTCACAACAGTTTTGGGTTGGCAGAAAACATGTGAGAGTGTTGATGACATAACAGCAACATTATCTTCGCTAAGTACTGAGATAGATATTGGGGTCCTTTATCGTGGTCTAGATCCAAAAAATACTCGCACTTTGGTCTCTGTGGTTTGCTACTATGGGCAACATTATCACTGCTTTGCATACAGTCATGAGCATGAATGTTGGATAATGTATGATGATAAAACTGTTAAGGTTATTGGGAGCTGGGCTGAAGTACTCACCATGTGTGAAAGAGGGCATTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTAG 4899 40.85 MGHKKKNAAPRSKRSEAASPAAQVASGGAAGDAVSILKSDPCLQPNDHNNMSLHNHDQGEVESGAMIESNSSSVVKLECERALNALRRGSHNRALKLMKDACLRHENSALIHRVLGTVCVKVASIIDDSHTKQRHLKNAIESAHKAVELSPNSIEFAHFYANLLYEVANEGKEYEEVVQECERALGIENPIDPARESLQDESQQKISTAEGRISHVQSELRQLIQKSNIASLSTWMKNFGNGEEKFRLIPIRRVAEDPMEVKLVQAKRPNEIKKANKTPEERRKEIEVRVAAAKLLQQKSETSQIQNDGDKNDIPSGSGQRSGERRKHGNLRKQGSSGERKDRVQLYWKSLSIDSKTDLLRVKINDLKEHFNSSKDGSAAKVLSELSFCEANKSWKFWVCCRCYEKFSDSESHMQHVVQEHMGNLLPKMQSILPKNVDNEWIEMIHGCPWRPLDVSASVKMLTSKTLDKDAKLVEDLCSKYQTEDCGNYLKNEQDSSPEKGSSENSCINNTFERNNCGEKTDMECGNFHEDQGPMEYSLPDSWPTSDDSDRSKLLEKIHAIFELLISHKYLAESHLKKVIQFTMDELLGLPSGSYLLNHGLDQTPICICFLGALQLKKILKYLQELSHSCGLDRYSEKCNNCINDVNNGLQVTETKDKIFLKGDGSYLLLDGCLMSDVGLTGTINPTAAENVADLTSVKSINGNWILPDVDAILSYIFVGPSSEEDLASWLRTKEEKIKEGREILQMLEKEFYHLQSLCERKCEHISYEGALQAVEDLCLEEGKKRENVTDFVHQSYESVLRKRREEFVQSENDGMFLGNRFELDALTNVLKEAEALNANQFGYEETHAGLTSQFCDLESGENEYWRAKDYFHQVDTCIEVAIQRQKEQLSIEISKIDAQIMKNVTEMQHLELKLEPVCSHDYQSILLPFVKSYLRAKLEDLAVKDATQKSDAAREAFLAELERDSKKGASRGNDNLKQEKTKDKKKHKESKKAKDSKNFGGCEEDIIHHEISGQGLFSLQSDDGDNLDSDAAVSENADDLKLQEEEFRQKIELEAEERKLEETLEYQRRIEEEAKQKHLAEQHKKSAQTYTEDNIAEQLVEDNAFHQKFECSPMNGVPTALRVNDALDAQNPSDKQGLLNGKISENCLPPYDRRTGRKGRRSKGSAKLVNGQYKTMTSDKDNCDLEVRISQLDNHVKEPEIFPGNPLADSVTSNWEDNGITTLSHVQVEDYEEERFQADLKKAVIQSLDTFQARQKMPTVSGVRKSRTTSAEVNHIDISSSDVNGEIAKRTDVFGTGLKNEVGEYNCFLNVIIQSLWHLRLFRDEFLRRSTIEHVHVGDPCVVCALYEIFSSLSIASTDSSQQEPVAPTSLRMALSNLYPDSNFFQEGQMNDASEVLAVIFSCLHQAFTSTSIQASDAKLVEINSMGSWDCANDVCLVHSIFGMDIFERMNCFSCGLESRHLKYTSFFHNINASALRTTKVLCAESSFDELLNVVEMNHQVACDVEAGGCGKLNYIHHFLASPPHVFTTVLGWQKTCESVDDITATLSSLSTEIDIGVLYRGLDPKNTRTLVSVVCYYGQHYHCFAYSHEHECWIMYDDKTVKVIGSWAEVLTMCERGHLQPQVLFFEAVN 1632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42171855 42178864 + Bma008356.2 Bma12g01008 92434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01008 1632 Coils Coil 974 994 - -
Bma12g01008 1632 Coils Coil 206 226 - -
Bma12g01008 1632 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1632 - -
Bma12g01008 1632 Pfam Ubiquitin carboxyl-terminal hydrolase 1298 1627 IPR001394 GO:0004843|GO:0016579
Bma12g01008 1632 MobiDBLite consensus disorder prediction 964 984 - -
Bma12g01008 1632 MobiDBLite consensus disorder prediction 320 338 - -
Bma12g01008 1632 Pfam Protein of unknown function (DUF627) 81 188 IPR006866 -
Bma12g01008 1632 MobiDBLite consensus disorder prediction 964 1001 - -
Bma12g01008 1632 Gene3D Cysteine proteinases 1283 1632 - -
Bma12g01008 1632 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1632 - -
Bma12g01008 1632 SUPERFAMILY Cysteine proteinases 1297 1629 IPR038765 -
Bma12g01008 1632 MobiDBLite consensus disorder prediction 1133 1167 - -
Bma12g01008 1632 MobiDBLite consensus disorder prediction 297 319 - -
Bma12g01008 1632 Coils Coil 731 751 - -
Bma12g01008 1632 CDD Peptidase_C19 1390 1629 - -
Bma12g01008 1632 ProSitePatterns Zinc finger C2H2 type domain signature. 400 421 IPR013087 -
Bma12g01008 1632 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1297 1631 IPR028889 -
Bma12g01008 1632 MobiDBLite consensus disorder prediction 1 32 - -
Bma12g01008 1632 SUPERFAMILY TPR-like 81 187 IPR011990 GO:0005515
Bma12g01008 1632 Gene3D Tetratricopeptide repeat domain 65 210 IPR011990 GO:0005515
Bma12g01008 1632 Pfam Protein of unknown function (DUF629) 343 881 IPR006865 -
Bma12g01008 1632 MobiDBLite consensus disorder prediction 297 338 - -
Bma12g01008 1632 Coils Coil 1038 1074 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00201 Bma12g01008 CCT
Bma08g00201 Bma12g01008 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01008 Bma-Chr12:42171855 Bma08g00201 Bma-Chr8:2384899 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01008 - - mcha:111007268 2009.96