Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01009 ATGACTCTTAAAGGCGGCACCAGCCAAGCCTGCGCCGCATGCAAATACCAGAGGAGAAAGTGCAAGGCCGATTGCCCTCTCGCTCCATTTTTCCCCCCGGACCAACCCAAACTCTTTCAGAATGCGCACAATCTGTTCGGCGTCAGAAACATCTTGAACATCCTCAAGAACTTGGACCACGACCAGAAGTCCGAGGCCATGCGCTCCATCATCTACCAATCCAACATGCGTGACAGGTTTCCCGTCAATGGCTGCTGGGAGGTCATCTGTTATCTCCGGTACCAGTTGCAGGCCGTCGAAGAAGAGTTTCACGGCGTCCTGTCCCAGCTAGAGATGCATAGACAGCATCAGTTTGAAGAAGATCTTACTTCTCAGCTCGAGCTTGGAATGGGTCCACCCACTAATTCAATCACACTTTTGAATCAATCTACTGTAATCCCAGCACAAAATGAACCTAATTACAACCCTATTTGCTTTGATGTTAGAGATAGTTTCGCAAATCCTTCGTGGGTTCCACACCCTTTTGCTGAAAATAACTTATTTCCCGTCCAAGAAAAAGTTCAAAACTACGATGAAATGCAGCCTTTTTTCGACACCATAGATGATAGGCACTCGTATATTGATTCTAACGAGTCTAGGTAA 642 46.88 MTLKGGTSQACAACKYQRRKCKADCPLAPFFPPDQPKLFQNAHNLFGVRNILNILKNLDHDQKSEAMRSIIYQSNMRDRFPVNGCWEVICYLRYQLQAVEEEFHGVLSQLEMHRQHQFEEDLTSQLELGMGPPTNSITLLNQSTVIPAQNEPNYNPICFDVRDSFANPSWVPHPFAENNLFPVQEKVQNYDEMQPFFDTIDDRHSYIDSNESR 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42180444 42181085 + Bma008357.1 Bma12g01009 92435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01009 213 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Bma12g01009 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 7 153 - -
Bma12g01009 213 Pfam Lateral organ boundaries (LOB) domain 10 104 IPR004883 -
Bma12g01009 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01009 - - - mesc:110617644 259.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00200 Bma12g01009 CCT
Bma08g00200 Bma12g01009 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01009 Bma-Chr12:42180444 Bma03g00188 Bma-Chr3:1449246 1.06E-25 dispersed
Bma12g01009 Bma-Chr12:42180444 Bma08g00200 Bma-Chr8:2381997 6.82E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g485 . . Bda06g00557 Bda15g00586 Bpe12g00562 . . Bma12g01009 . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0868 . Cone13ag0095 Cone19ag0098 . . . . Blo13g00027 Blo15g00256 . . Bpe07g00799 . . Bma08g00200 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006247 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 0 1 4 1 1 1 1 1 1 1 1 1 1 1 2 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58162 PF03195 LOB 5.60E-33 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01009 Bma_Chr12 FPKM 18.589081 19.00465 43.834354 47.849789 11.954851 10.39491 10.446563 23.323153 22.861509 30.354103