Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01012 TTTGCAGAGATGAACATGAATATCCAGACTCTGACCACCAAATGGATCGCTATTGTGGCGAGCATATGGATCCAGTGCTCCACCGGTTCGTCCTACACCTTCAGCATCTATTCCTCCGCTCTCAAATCCACCCAGAATTATGACCAATCCACTCTCGACACCGTTTCCGTCTTCAAGGATATTGGGGCGAACGCCGGAATCCTTTCGGGTCTGCTTTACTCCGCTGTTACGCCCAGTAATTCCCGTCTTCCGTCGAGATTCCTCAGTGGCCCGTGGGTAGTCCTGGTGGCGGGGTCGGTCCAGTGCTTCGCCGGCTACTTTTTTATGTGGGCTGCAGTCTCTGGGATGATTCAGAGGCCTCCGGTGCCGGTGATGTGCTTGTTCATGTTTTTAGCGGCGCATGCCCAAACCTTTTTCAATACTGCCAATGTGGTTACCGGCCTTTACAATTTTGGTCAGTATGGTGGAACCATTGTGGGTATAATGAAGGGGTTTCTTGGTCTCAGTGGAGCAATCCTCATTCAATTGTACAGTACTGTATGCAAAGGAGAGCCGAGCACTTATCTTCTTATGCTCGCTTTGTTGCCTACGTGTCTCTCTCTCTCTCTCATGTGTCTGGTGAGAATTGACAAATCAAATGGTGTTAATGAGAAGAAGCACTTAAATGGTTTTTCTGCTAATGCCTTAATCATTGCTGGCTATCTCATGGCGATAATAATATTGCAAAACATCATTACTTTCCCATTTTGGGCGAGTATTTTGACGTTCATCATTCTCTTGGGTCTACTTGCTTTACCTCTTGGAATTGGAATCAATGCTAGGAGGGAACAGTTAAACAGATCTTTACTCTCATTATCCGCCAATCAAAATCCTCTGATGGACAGCTTGGAGCCAATGCCATCCTCCAAGTTTCCTAATGCAGAGAGTTCTGTAAAATATCACGAGCTGCCTTCTGATGAGGGTAAAATGACGGATAGTATCAGTGACAAAATGCCAACCGATGAAGAGGGTATGAATATCTTGCAAGCCATGTGTTCGGTAAATTTTTGGCTATTGTCTCTTGCCATGGTGTGCGGAATGGGGTCTGGTCTGGCAACAATAAACAACATGAGCCAAATCGGCCAATCTCTTGGTTACAGCACAGTAGAGATTAACACATTTGTTTCCTTGTGGAGTATATGGAATTTTCTCGGCCGTTTCGGGGCTGGTTTTTTGTCCGATTACCTTCTCCATACTGCAGGCTGGGCAAGGCCATTGTTAATGGCGATAACTTTAGCGACTATGAGTGTAGGACACTTGATCATCGCGTCTGGAATTTCGGGAACTTTATACGTTGGTTCGGTCCTCGTGGGTATTTGCTATGGTTCGCAGTGGTCCCTTATGCCCACCATCACTTCAGAGATATTTGGGATGGAGCATATGGGAACCATTTTCAACACCATAGCCGTGGCAAGTCCCGTTGGATCGTACATCTTTTCAGTAAGAGTGATTGGATATATTTACGATAAAGAAGCCGCGGAAGCGGATAATACTTGCTCGGGTACTCACTGCTTTATGCTGTCTTTCATTGTCATGGCGTCTGTTGCTCTGTGCGGGTGTTTTGTTGCCGTTGCTCTGTTCTATCGGACTAGGCGGCTGTATCAGCTGATTGTGCTTAGAAGATTTAAGAAATCTCCCAGACAATGA 1686 46.09 FAEMNMNIQTLTTKWIAIVASIWIQCSTGSSYTFSIYSSALKSTQNYDQSTLDTVSVFKDIGANAGILSGLLYSAVTPSNSRLPSRFLSGPWVVLVAGSVQCFAGYFFMWAAVSGMIQRPPVPVMCLFMFLAAHAQTFFNTANVVTGLYNFGQYGGTIVGIMKGFLGLSGAILIQLYSTVCKGEPSTYLLMLALLPTCLSLSLMCLVRIDKSNGVNEKKHLNGFSANALIIAGYLMAIIILQNIITFPFWASILTFIILLGLLALPLGIGINARREQLNRSLLSLSANQNPLMDSLEPMPSSKFPNAESSVKYHELPSDEGKMTDSISDKMPTDEEGMNILQAMCSVNFWLLSLAMVCGMGSGLATINNMSQIGQSLGYSTVEINTFVSLWSIWNFLGRFGAGFLSDYLLHTAGWARPLLMAITLATMSVGHLIIASGISGTLYVGSVLVGICYGSQWSLMPTITSEIFGMEHMGTIFNTIAVASPVGSYIFSVRVIGYIYDKEAAEADNTCSGTHCFMLSFIVMASVALCGCFVAVALFYRTRRLYQLIVLRRFKKSPRQ 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42196598 42199376 + Bma008360.1 Bma12g01012 92438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01012 561 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 10 558 - -
Bma12g01012 561 SUPERFAMILY MFS general substrate transporter 230 545 IPR036259 -
Bma12g01012 561 Gene3D MFS general substrate transporter like domains 341 548 IPR036259 -
Bma12g01012 561 CDD MFS_Mch1p_like 14 533 - -
Bma12g01012 561 Pfam Major Facilitator Superfamily 352 544 IPR011701 GO:0022857|GO:0055085
Bma12g01012 561 Pfam Nodulin-like 14 269 IPR010658 -
Bma12g01012 561 PANTHER F25A4.25 PROTEIN 10 558 - -
Bma12g01012 561 SUPERFAMILY MFS general substrate transporter 10 208 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01012 - - - qsu:112039582 759.985
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00359 Bma-Chr3:2654455 Bma12g01012 Bma-Chr12:42196598 3.65E-110 dispersed
Bma08g00921 Bma-Chr8:48186928 Bma12g01012 Bma-Chr12:42196598 4.98E-98 dispersed
Bma11g00195 Bma-Chr11:1750042 Bma12g01012 Bma-Chr12:42196598 1.10E-106 dispersed
Bma12g01012 Bma-Chr12:42196598 Bma13g00691 Bma-Chr13:19159163 2.46E-84 dispersed
Bma12g01012 Bma-Chr12:42196598 Bma03g00062 Bma-Chr3:512202 3.71E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g481 . . . . . . . Bma12g01012 . . . Cma11g00169 . . . . Cpe04g01522 Bhi02g00365 Tan09g2174 Cmetu02g0192 . Hepe09g0147 . . Cla06g01618 Cam06g1797 Cec06g1847 Cco06g1854 Clacu06g1757 Cmu06g1701 Cre06g2519 . . . . . . . . . . . . Bpe07g00801 . . . . . Cmo11g00139 . . . . . Cpe18g00811 . . . . . . . Cla04g01216 . . . . . . Lsi06g01498 Csa01g00202 Chy02g02529 Cme02g01914
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g00901 . 1 768 Nodulin-like Gene Family AT4G19180 55.8 1.2e-234 809.7
Bma14g00821 . 21 284 Nodulin-like Gene Family AT3G45870 67.4 4.5e-94 341.3
Bma14g00790 . 21 284 Nodulin-like Gene Family AT3G45870 67.8 7.6e-94 340.5
Bma07g01212 . 216 424 Nodulin-like Gene Family AT3G45870 66.5 2.8e-72 268.9
Bma14g01518 . 1 331 Nodulin-like Gene Family AT3G28050 57.3 9.3e-108 387.1
Bma05g00755 . 1 332 Nodulin-like Gene Family AT5G47470 65.5 1.1e-111 400.2
Bma14g00048 . 4 330 Nodulin-like Gene Family AT5G47470 51.5 8.3e-91 330.9
Bma14g01518 . 1 303 Nodulin-like Gene Family AT5G40230 52.6 1.7e-85 313.2
Bma14g01518 . 1 303 Nodulin-like Gene Family AT5G40240 51.1 1.9e-84 309.7
Bma01g02344 CCT,ECH 16 271 Nodulin-like Gene Family AT3G53210 61.7 2.0e-88 322.4
Bma01g00742 CCT,ECH 16 275 Nodulin-like Gene Family AT3G53210 59.5 6.1e-85 310.8
Bma01g01889 . 109 376 Nodulin-like Gene Family AT2G37450 58.2 3.1e-81 298.5
Bma03g00300 CCT 1093 1328 Nodulin-like Gene Family AT2G37450 55.5 4.0e-68 255.0
Bma08g00989 . 98 331 Nodulin-like Gene Family AT2G37450 53.4 3.7e-66 248.4
Bma01g01889 . 11 372 Nodulin-like Gene Family AT2G37460 62.5 3.6e-123 438.3
Bma08g00989 . 10 337 Nodulin-like Gene Family AT2G37460 59.5 5.9e-105 377.9
Bma03g00300 CCT 1008 1333 Nodulin-like Gene Family AT2G37460 59.5 5.5e-103 371.3
Bma04g01450 . 12 358 Nodulin-like Gene Family AT2G37460 52.6 7.9e-94 340.9
Bma01g02344 CCT,ECH 1 386 Nodulin-like Gene Family AT1G75500 76.3 9.7e-164 573.2
Bma01g00742 CCT,ECH 1 374 Nodulin-like Gene Family AT1G75500 71.0 8.3e-147 516.9
Bma06g00629 . 9 332 Nodulin-like Gene Family AT1G60050 51.8 1.1e-98 357.1
Bma03g00300 CCT 1001 1355 Nodulin-like Gene Family AT5G13670 51.9 1.1e-98 357.1
Bma08g00989 . 8 332 Nodulin-like Gene Family AT5G13670 53.4 1.3e-91 333.6
Bma03g00300 CCT 1004 1336 Nodulin-like Gene Family AT2G39510 66.7 2.1e-123 439.1
Bma08g00989 . 12 332 Nodulin-like Gene Family AT2G39510 64.8 3.0e-122 435.3
Bma01g01889 . 1 369 Nodulin-like Gene Family AT2G39510 56.4 2.0e-110 396.0
Bma04g01450 . 15 337 Nodulin-like Gene Family AT2G39510 54.6 2.1e-94 342.8
Bma03g00405 . 11 337 Nodulin-like Gene Family AT2G39510 50.6 4.4e-89 325.1
Bma14g01518 . 4 303 Nodulin-like Gene Family AT4G15540 51.7 2.3e-84 309.3
Bma01g02646 . 3 379 Nodulin-like Gene Family AT4G08300 58.6 4.4e-113 404.8
Bma04g01450 . 8 337 Nodulin-like Gene Family AT4G08300 52.4 1.8e-90 329.7
Bma03g00405 . 1 365 Nodulin-like Gene Family AT5G07050 67.9 3.5e-140 495.0
Bma04g01450 . 9 390 Nodulin-like Gene Family AT5G07050 65.7 1.3e-134 476.5
Bma08g00989 . 12 331 Nodulin-like Gene Family AT5G07050 54.9 2.5e-90 329.3
Bma03g00300 CCT 1008 1328 Nodulin-like Gene Family AT5G07050 54.3 4.3e-90 328.6
Bma04g01450 . 12 386 Nodulin-like Gene Family AT3G56620 56.2 1.1e-106 383.6
Bma03g00405 . 12 352 Nodulin-like Gene Family AT3G56620 54.0 4.0e-98 355.1
Bma06g00629 . 7 369 Nodulin-like Gene Family AT1G70260 51.2 7.1e-103 370.9
Bma01g00060 BCT 2 354 Nodulin-like Gene Family AT1G70260 51.1 1.1e-98 357.1
Bma04g01450 . 12 378 Nodulin-like Gene Family AT2G40900 58.5 3.3e-111 398.7
Bma03g00405 . 12 384 Nodulin-like Gene Family AT2G40900 51.7 1.2e-100 363.6
Bma01g02344 CCT,ECH 16 351 Nodulin-like Gene Family AT3G18200 62.2 1.8e-114 409.5
Bma01g00742 CCT,ECH 16 349 Nodulin-like Gene Family AT3G18200 55.1 1.8e-98 356.3
Bma14g00835 . 109 333 Nodulin-like Gene Family AT4G01440 51.1 7.8e-61 230.7
Bma01g02646 . 3 381 Nodulin-like Gene Family AT1G44800 53.4 2.1e-107 386.0
Bma04g01450 . 8 337 Nodulin-like Gene Family AT1G44800 52.1 3.0e-90 328.9
Bma07g01212 . 248 521 Nodulin-like Gene Family AT5G45370 69.8 2.5e-105 378.6
Bma14g00821 . 108 381 Nodulin-like Gene Family AT5G45370 66.4 3.2e-100 361.7
Bma14g00790 . 108 381 Nodulin-like Gene Family AT5G45370 66.4 4.2e-100 361.3
Bma01g02646 . 7 334 Nodulin-like Gene Family AT1G21890 60.3 7.5e-107 384.0
Bma04g01450 . 15 318 Nodulin-like Gene Family AT1G21890 55.2 1.2e-88 323.6
Bma03g00405 . 9 317 Nodulin-like Gene Family AT1G21890 50.5 5.8e-83 304.7
Bma13g00691 . 1 562 Nodulin-like Gene Family AT1G80530 61.2 4.8e-196 681.0
Bma01g00323 . 5 571 Nodulin-like Gene Family AT1G80530 57.4 9.6e-181 630.2
Bma12g00633 . 4 422 Nodulin-like Gene Family AT4G19450 65.6 6.7e-155 543.9
Bma12g00625 . 1 419 Nodulin-like Gene Family AT4G19450 65.9 2.6e-154 542.0
Bma12g01012 . 9 554 Nodulin-like Gene Family AT1G74780 61.5 1.3e-187 652.9
Bma12g00928 . 11 537 Nodulin-like Gene Family AT4G34950 70.6 9.0e-219 756.5
Bma12g00923 . 13 492 Nodulin-like Gene Family AT4G34950 72.6 3.7e-204 708.0
Bma08g00259 . 7 579 Nodulin-like Gene Family AT5G14120 63.9 1.7e-204 709.1
Bma08g00254 . 7 579 Nodulin-like Gene Family AT5G14120 63.7 5.4e-203 704.1
Bma12g00923 . 12 390 Nodulin-like Gene Family AT2G16660 71.3 1.8e-154 542.3
Bma12g00928 . 10 388 Nodulin-like Gene Family AT2G16660 71.1 2.7e-153 538.5
Bma08g00921 . 543 1128 Nodulin-like Gene Family AT2G39210 63.0 3.3e-211 731.5
Bma03g00359 . 4 570 Nodulin-like Gene Family AT2G39210 63.8 1.5e-208 722.6
Bma03g00360 . 4 569 Nodulin-like Gene Family AT2G39210 63.8 1.1e-206 716.5
Bma03g00062 . 5 556 Nodulin-like Gene Family AT2G39210 64.9 6.7e-204 707.2
Bma11g00195 . 10 565 Nodulin-like Gene Family AT2G39210 57.7 2.8e-186 648.7
Bma12g00633 . 9 573 Nodulin-like Gene Family AT3G01630 54.3 2.6e-157 552.4
Bma12g00625 . 6 570 Nodulin-like Gene Family AT3G01630 53.6 4.9e-156 548.1
Bma08g00254 . 7 434 Nodulin-like Gene Family AT3G01930 64.7 5.6e-152 534.3
Bma08g00259 . 7 434 Nodulin-like Gene Family AT3G01930 64.4 7.3e-152 533.9
Bma12g01012 . 6 550 Nodulin-like Gene Family AT1G18940 57.0 6.5e-179 624.0
Bma08g00259 . 7 581 Nodulin-like Gene Family AT5G50520 50.4 2.4e-152 535.8
Bma08g00254 . 7 581 Nodulin-like Gene Family AT5G50520 50.3 7.7e-151 530.8
Bma08g00259 . 7 581 Nodulin-like Gene Family AT5G50630 50.4 2.4e-152 535.8
Bma08g00254 . 7 581 Nodulin-like Gene Family AT5G50630 50.3 7.7e-151 530.8
Bma12g01012 . 12 557 Nodulin-like Gene Family AT2G34350 56.0 5.9e-164 574.3
Bma11g00195 . 17 551 Nodulin-like Gene Family AT2G28120 72.4 6.3e-228 786.9
Bma03g00062 . 2 562 Nodulin-like Gene Family AT2G28120 58.9 6.6e-185 644.0
Bma08g00921 . 538 1108 Nodulin-like Gene Family AT2G28120 57.8 1.3e-180 629.8
Bma03g00359 . 19 577 Nodulin-like Gene Family AT2G28120 58.2 4.9e-180 627.9
Bma03g00360 . 19 576 Nodulin-like Gene Family AT2G28120 58.2 7.1e-179 624.0
Bma12g00633 . 4 577 Nodulin-like Gene Family AT1G31470 58.6 4.6e-178 621.3
Bma12g00625 . 1 574 Nodulin-like Gene Family AT1G31470 57.9 6.7e-177 617.5
Bma01g02501 . 30 222 Nodulin-like Gene Family AT1G76800 70.5 1.2e-66 249.6
Bma04g00363 . 48 250 Nodulin-like Gene Family AT1G76800 65.7 2.9e-63 238.4
Bma08g00451 . 19 218 Nodulin-like Gene Family AT1G76800 62.5 1.1e-59 226.5
Bma08g00488 . 36 218 Nodulin-like Gene Family AT1G76800 66.1 3.3e-59 224.9
Bma01g02501 . 34 222 Nodulin-like Gene Family AT3G25190 60.9 1.5e-57 219.5
Bma08g00451 . 34 218 Nodulin-like Gene Family AT3G25190 60.1 6.0e-54 207.6
Bma08g00488 . 34 218 Nodulin-like Gene Family AT3G25190 60.1 1.0e-53 206.8
Bma04g00363 . 59 255 Nodulin-like Gene Family AT3G25190 56.9 3.1e-50 195.3
Bma01g02501 . 19 222 Nodulin-like Gene Family AT1G21140 69.6 4.2e-70 261.2
Bma04g00363 . 41 254 Nodulin-like Gene Family AT1G21140 63.9 1.3e-66 249.6
Bma08g00451 . 27 218 Nodulin-like Gene Family AT1G21140 64.6 7.2e-62 233.8
Bma08g00488 . 27 218 Nodulin-like Gene Family AT1G21140 64.6 7.2e-62 233.8
Bma01g02501 . 35 219 Nodulin-like Gene Family AT3G43630 75.7 7.9e-69 256.9
Bma04g00363 . 46 253 Nodulin-like Gene Family AT3G43630 66.2 2.4e-65 245.4
Bma08g00451 . 27 216 Nodulin-like Gene Family AT3G43630 67.0 3.6e-61 231.5
Bma08g00488 . 27 216 Nodulin-like Gene Family AT3G43630 67.0 3.6e-61 231.5
Bma01g02501 . 19 222 Nodulin-like Gene Family AT3G43660 68.6 6.0e-69 257.3
Bma04g00363 . 46 254 Nodulin-like Gene Family AT3G43660 64.5 4.5e-64 241.1
Bma08g00451 . 27 218 Nodulin-like Gene Family AT3G43660 65.6 3.9e-60 228.0
Bma08g00488 . 27 218 Nodulin-like Gene Family AT3G43660 65.6 6.7e-60 227.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001299 1 2 1 1 1 2 2 4 3 2 3 3 3 2 3 4 3 1 4 3 2 5 3 3 3 2 3 2 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01012 Bma_Chr12 FPKM 0.0 0.0 0.519403 0.639664 59.704323 50.352055 56.580975 0.0 0.0 0.0