Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01018 GTGGCTCACCAGAACATTCGCCGGCGCATCTTAGCTTCGACCCTACAGGCTAAAACTTCTTCAATGGATTCCACCCTCAAGAAACAAAACAAACCCAAACCCCCTATTTCACCAACACCCTCTTTCCAGAACTTCTCTGAATCATGTCCAACGGAAAAACCCAGCAGGGATCCTTTATACAAAGCTATGACTCTTTCCTTCATTGTTGATTCTTCTAACTTATCTCTTCCCAAATCAAGTTCCCTACCCAGAAATCTTCTTCCGACTCCAGAAATAGAGAAGATGAGCATAACGACAAAAGAAGGATCAAAAGAATGGGAGGAGAAGAAGAAGAAGAAGTTTTACGAGTTCATTGTGAGTAAAGAGAAATCTATGGAAGGAAATGAAAGCAAGAGTCTGTGTGGTGAGTTCAAAAATGGAAAATTTAAGGAATTGGAAGAAAGGTTCGAATGCGAGAGAAGAAGGCAGTCGGTTTCATTTCGAGCAGCACAGGTTGAGGCGGCTGGTATTTTTGCTGGTAATGGTGTGAAAATTGTTGCAGTTTATATGCCTCCGTTTATGCAGATCCATGCAGTAAATTGCGCCAGAAAGACTCGTGCTGGTATGGAAAAGTTCACCTCCAAGGCTCTCGCCTCAACTCTCAAAAAGGAATTTGATGGGGTTTATGGACCGGCATGGCACTGCATTGTGGGATCAAGTTTTGGGTCTTTTGTGACACACTCTAATGATTCCAATGGTAAACTGATGAAATTGGGAGAATCCAGAGATGAAAATTGTCGCTCAAAAGCTGAAGTAGAAGTTGAAACAAACTCGGCCGATGGGACCAAGCCCGACGAACCAAGTTCCAAGCCGTCCGAGCCACCTAAAGATTATATTCATGTGAGAGCAAGAAGAGGCCAAGCAACCGATAGCCACAGTCTAGGAGAAAGAGCGAGAAGAGAGAAAATCAGCGAGAGAATGAAAATTCTCCAAGAGTTGGTGCCGGGATGTAACAAGGTCATAGGGAAGGCACACGTTCTCGATGAGATTATCAATTACATTCAATCTCTGCAGCATCAAGTCGAGTTCCTGTCCATGAAGCTGGAAGCAGTTAATTCAAGAATGAATGCGATAGAAGGCTATACTAGCAAGGATAGTGGAGTGCAGCCATTTGATGGTGCAGGAATGGTATATGGGTGGCAGGCAGTTCCGAGAGAGTATGGTCAAGGCTTACCGCATGAATGGTTGCATATGCAAATTGGCGGTGGTTTTGAAAGAGCAAATTAA 1266 43.92 VAHQNIRRRILASTLQAKTSSMDSTLKKQNKPKPPISPTPSFQNFSESCPTEKPSRDPLYKAMTLSFIVDSSNLSLPKSSSLPRNLLPTPEIEKMSITTKEGSKEWEEKKKKKFYEFIVSKEKSMEGNESKSLCGEFKNGKFKELEERFECERRRQSVSFRAAQVEAAGIFAGNGVKIVAVYMPPFMQIHAVNCARKTRAGMEKFTSKALASTLKKEFDGVYGPAWHCIVGSSFGSFVTHSNDSNGKLMKLGESRDENCRSKAEVEVETNSADGTKPDEPSSKPSEPPKDYIHVRARRGQATDSHSLGERARREKISERMKILQELVPGCNKVIGKAHVLDEIINYIQSLQHQVEFLSMKLEAVNSRMNAIEGYTSKDSGVQPFDGAGMVYGWQAVPREYGQGLPHEWLHMQIGGGFERAN 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42230454 42238508 + Bma008366.1 Bma12g01018 92444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01018 421 SUPERFAMILY DLC 175 242 IPR037177 GO:0007017|GO:0030286
Bma12g01018 421 Coils Coil 347 367 - -
Bma12g01018 421 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 173 251 IPR037177 GO:0007017|GO:0030286
Bma12g01018 421 PANTHER BNAC05G07950D PROTEIN 235 420 - -
Bma12g01018 421 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 350 IPR011598 GO:0046983
Bma12g01018 421 SMART finulus 306 356 IPR011598 GO:0046983
Bma12g01018 421 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 298 369 IPR036638 GO:0046983
Bma12g01018 421 MobiDBLite consensus disorder prediction 265 290 - -
Bma12g01018 421 MobiDBLite consensus disorder prediction 1 55 - -
Bma12g01018 421 MobiDBLite consensus disorder prediction 9 32 - -
Bma12g01018 421 CDD bHLH_AtBPE_like 290 369 - -
Bma12g01018 421 Gene3D - 297 373 IPR036638 GO:0046983
Bma12g01018 421 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 235 420 IPR024097 GO:0006355
Bma12g01018 421 Pfam Dynein light chain type 1 176 243 IPR001372 GO:0007017|GO:0030286
Bma12g01018 421 Pfam Helix-loop-helix DNA-binding domain 304 351 IPR011598 GO:0046983
Bma12g01018 421 SMART Dynein_light_2 171 251 IPR001372 GO:0007017|GO:0030286
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00196 Bma12g01018 CCT
Bma08g00196 Bma12g01018 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00197 Bma-Chr8:2344396 Bma12g01018 Bma-Chr12:42230454 2.14E-54 dispersed
Bma12g01018 Bma-Chr12:42230454 Bma14g01759 Bma-Chr14:37842115 4.87E-50 dispersed
Bma01g00077 Bma-Chr1:746806 Bma12g01018 Bma-Chr12:42230454 5.74E-59 wgd
Bma12g01018 Bma-Chr12:42230454 Bma03g00806 Bma-Chr3:7483836 1.15E-34 wgd
Bma12g01018 Bma-Chr12:42230454 Bma08g00196 Bma-Chr8:2338932 6.51E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58165 PF01221 Dynein_light 6.30E-18 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01018 - - cpap:110806643 251.906