Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01019 ATGGAGCTTCAGAATACAGTGAAGGAAGCCCTAAATGCACTCTACCATCACCCTGATGATACGGTTCGTATGCAGGCCGATCGGTGGCTCCAAGACTTTCAGCGAACTCTTGATGCCTGGCAGGTTGCTGATAATTTGCTACATGATTCTACTAGCAATCTGGAGACGTTGATATTTTGTTCTCAGACCCTTAGAAGCAAGGTACAACGAGATTTTGAAGAGCTACCTTCAGAAGCATTTCGCCCGTTACGTGATTCATTGAATAACTTATTGAGGAAGTTTCTCAAGGGACCACCTAAAGTTAGAACTCAGATTAGCATTGCTGTCGCTGCATTGGCTGTACATGTTTCTGCAGAAGATTGGGGGGATGGTGGAATTGTGAATTGGCTTCGAGATGAGATGAATTCACATCCAGAATATGTTCCTGGATTTTTGGAGTTGTTAACTGTTTTGCCAGAGGAAGTGTATAACTATAAGATAGCAGCTCGTCCAGATAGACGGCGTCAATTTGAAAAAGAGCTCACAACACAAATGGAAGTTGCTCTTAACATTTTGACAGCATGTTTGAATATTAATGAGCTTAAGGAGCAGGTTCTTGATGCATTTGCTTCTTGGCTTCGTTTAAAGCATGGGTTCCCGGGGTCTGTGCTTGCTTCTCATCCATTGGTGCTCACTGCTCTCACAAGCTTAAATACAGAGATAATTTCAGAGGCGTCAGTTAATGTTATTTCTGAATTGATACACTACTCGGCATCTGGAAATTCTGGTGGTGTTCCTGTTCACATGCCCTTAATTCAGGCCATTGTGCCACAAGTTATGAATTTAAAGGTGCAGCTTCGAGATTCTTCAAAGGATGAAGAAGATGTGAAGGCCATTGCTCGCTTATTTACTGACATGGGTGATTCATATGTTGAATTGATTGCATATGGTTCTGATGAATCAATGCTTATTGTCCATGCACTTTTGGAAGTTGCTTCACACCCAGAATATGATATTGCCTCAATGACATTCAATTTTTGGCATAGTCTTCAGGTCAACATGACCAAGAGAGATGCGTATATTTCTTTTGGTGATGATTCTTCTGTTGAAGCTGAGAGGAATAGAAGGTTGCATATATTTCGCCCAGTTAGTTTCCGAGTTCAATATCCTAAAGATTATCAAGACTTATCTTATGAGGACCTCAAAGAGTTTAAGCAAACAAGATATGCCGTTGCAGATGTTTTAATTGACGCTGCCTCTGTTTTGGGAGGTGATCTGACGCTGAAAATTCTCTATGTGAAGCTTGTGGAGGTTTGTTTATGCTGCTGCTTCCATTATTATGTTAAATGGGGATTCTATTTGTTGTTTTATTTCAATCGAAGTATGATGAATCCTTATACATTCAAAATGTCTTCAGTCTGTTTAACAGTTGGGGCATATTCAAAATGGTTTGATGCTTCATCAAGTGGATTGGCTGTATTACCTTCAGTAATAAATATCCTCATGAGTGGTATGGGAACATCAGAAGATTCTGCTGCTGCTGCAGCTTTGGCATTCAGACACATATGTGATGATTGCCGGAGAAAACTTTGTGGATCGTTGGATGGTCTCTTCCACATTTACAATAGTGCTGTTAATGGGGAAAGTAGTTTTAAAATATCTGCTGAGGACTCATTGCATCTGGTGGAGGCATTAAGCATGGTTATCACCGAACTTTCTCCAGACAATGGCAAGAGAGCAATGGAGGCATTGTGTGTGCCAGTTGTCACTCCTCTGCAGGAAATTGTCAATCAAGGCCCCGACTTATTAAATAAGAAATCTGCTCATGAGTTAACAGTTCATATTGATCGGTTTGCATACATCTTCAGATATGTAAATCATCCTGAAGCGGTGGCTGATGCAATTCAAAGGCTTTGGCCAATTTTCAAAGCCATCTTTGATCTCCGTGCATGGGACATGCGAACAATGGAGTCTCTTTGTCGAGCATGCAAATATGCTGTGAGAACCTCTGGAAGATTCATGGGTATTACCATTGGAGCTATGTTAGAAGAGATTCAAGGCCTCTTTAGACAGCATCATCAACCTTGTTTTCTTTATCTTTCCAGTGAAGTTATTAAAATATTTGGTTCTGATCCAACTTGTGCAAGTTATTTACAAAATTTGATTGAAGCACTATTCATGCACACTACACTGCTACTGACAAATATTCAGGAATTTACAGCCCGACCGGACATTGCGGATGATTGCTTTTTGTTGGCATCAAGATGTATACGCTACTGTCCTCAATTATTTATTCCATCTGCAGTGTTTCCATCATTAGTAGATTGCTCAATGATTGGAATCACAGTCCAGCATAGGGAAGCCTGCAATTCTATATTGACCTTCTTAGGAGATATTTTTGATCTTACAAATTCTGGCGAAAGAGAGCAGTACTTGCTTATCAGAGATACAGTAATCAAACCACGAGGTCCAGTCATCACAAGAATTTTGGTAGCATCATTAACCGGAGCTTTACCTAGTTCTCGATTAGAACCGGTTACATACACTCTATTGGCTCTAACTCGAACTTTTGGCCTGGAAGCACTTGAGTGGGCAAAGGCAAGTGTTTCACTAATTCCATTGACTGCAGTCACGGAAAAGGAGCGTGTGAGATTTTTGAAAGCATTGGCTGATGCAGCCTCCGGATTTGATATAAACACACTAACGAATCCAATCGAAGAGCTATCAGATGTTTGCCGACGAAATCGAAATGTTCAGGAGATTGTGCAAGGAGCTTTAAGGCCACTCGAGTTGAACTTGGTACCTGTATCATAG 2793 40.78 MELQNTVKEALNALYHHPDDTVRMQADRWLQDFQRTLDAWQVADNLLHDSTSNLETLIFCSQTLRSKVQRDFEELPSEAFRPLRDSLNNLLRKFLKGPPKVRTQISIAVAALAVHVSAEDWGDGGIVNWLRDEMNSHPEYVPGFLELLTVLPEEVYNYKIAARPDRRRQFEKELTTQMEVALNILTACLNINELKEQVLDAFASWLRLKHGFPGSVLASHPLVLTALTSLNTEIISEASVNVISELIHYSASGNSGGVPVHMPLIQAIVPQVMNLKVQLRDSSKDEEDVKAIARLFTDMGDSYVELIAYGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVNMTKRDAYISFGDDSSVEAERNRRLHIFRPVSFRVQYPKDYQDLSYEDLKEFKQTRYAVADVLIDAASVLGGDLTLKILYVKLVEVCLCCCFHYYVKWGFYLLFYFNRSMMNPYTFKMSSVCLTVGAYSKWFDASSSGLAVLPSVINILMSGMGTSEDSAAAAALAFRHICDDCRRKLCGSLDGLFHIYNSAVNGESSFKISAEDSLHLVEALSMVITELSPDNGKRAMEALCVPVVTPLQEIVNQGPDLLNKKSAHELTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDLRAWDMRTMESLCRACKYAVRTSGRFMGITIGAMLEEIQGLFRQHHQPCFLYLSSEVIKIFGSDPTCASYLQNLIEALFMHTTLLLTNIQEFTARPDIADDCFLLASRCIRYCPQLFIPSAVFPSLVDCSMIGITVQHREACNSILTFLGDIFDLTNSGEREQYLLIRDTVIKPRGPVITRILVASLTGALPSSRLEPVTYTLLALTRTFGLEALEWAKASVSLIPLTAVTEKERVRFLKALADAASGFDINTLTNPIEELSDVCRRNRNVQEIVQGALRPLELNLVPVS 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42242956 42255716 + Bma008367.1 Bma12g01019 92445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01019 930 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 3 436 - -
Bma12g01019 930 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 463 926 - -
Bma12g01019 930 Pfam Exportin 1-like protein 98 243 IPR013598 -
Bma12g01019 930 Gene3D - 2 443 IPR011989 -
Bma12g01019 930 Gene3D - 447 904 IPR011989 -
Bma12g01019 930 SUPERFAMILY ARM repeat 1 805 IPR016024 -
Bma12g01019 930 SMART IBN_N_2 26 93 IPR001494 GO:0006886|GO:0031267
Bma12g01019 930 PANTHER TRANSPORTIN MOS14 3 436 - -
Bma12g01019 930 PANTHER TRANSPORTIN MOS14 463 926 - -
Bma12g01019 930 Pfam Importin-beta N-terminal domain 26 91 IPR001494 GO:0006886|GO:0031267
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01019 K15436 TRPO3, MTR10; transportin-3 - csv:101215103 1538.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00870 Bma12g01019 CCT
Bma08g00252 Bma12g01019 CCT
Bma06g00234 Bma12g01019 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01239 Bma-Chr1:15596846 Bma12g01019 Bma-Chr12:42242956 4.77E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g423 . Blo16g00241 . Bda15g00634 Bpe12g00514 . Bma06g00234 Bma12g01019 Cmo13g00918 . Cma10g00281 Cma11g00228 Car10g00264 Car11g00205 Sed08g0300 Cpe20g00241 Cpe04g01443 Bhi02g00056 Tan09g2004 Cmetu02g1182 . Hepe09g0293 . . Cla06g01522 Cam06g1679 Cec06g1740 Cco06g1737 Clacu06g1644 Cmu06g1592 Cre06g2403 Cone2ag0789 . Cone13ag0023 Cone19ag0032 Lsi02g00370 Csa01g00849 . Cme12g01696 Blo13g00035 . Bda11g01633 . . Bpe15g00563 Bma03g00870 Bma08g00252 . Cmo10g00299 Cmo11g00231 Cma13g00889 . Car13g00729 Car18g00159 . Cpe18g00719 . . . . . . . . . . . . . . Lsi06g01388 Csa01g00332 Chy02g02411 Cme02g01804
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008466 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35