Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01022 ATGGCGGTTCTGATTCCCAGTAGACAGCTTTTCATCGATGGAGAATGGCGGGAACCAGTTCTTAAGAAACGCATCCCCATCATCAATCCTGCCACAGAAGAAATTATCGGGGATATCCCTGCAGCTACTGCGGAGGATGTAGAGCTAGCTGTAAATGCAGCTAGAAGAGCCCTCGACAAGAAAAAGGGGGGTGAATGGGCCTCTTCTTCCGGTGCTTTTCGTGCTAAGTATTTACGCTCCATTGCTGCCAAGGTAGTGGAGAAGAAATCCGGATTGGCAAAGCTCGAAGCGATTGATGGTGGAAAACCTTTGGACGAAGCTGCATGGGATATGGATGATGTGGCCGGGTGTTTTGAGTACTACGCAGACCTTGCTGAAGCCTTGGATGCTAAGCAGAAGACACCACTTTCTATCCCTATGGATACATTCAAGAGCTATGTTCTTAAGGAACCCATTGGAGTGGTTGGGTTGATTACTCCATGGAATTATCCTCTACTGATGGCTTCATGGAAAGTGGCTCCTGCATTGGCTGCTGGATGTGCTGCGATACTCAAGCCATCCGAACTTACTTCCGTGACTTGTTTGGAGCTGGCTGAAATATGTAGCAGTATCGGCCTTCCTCCTGGTGTTCTCAATGTTTTGACTGGTTATGGTCCCGAAGCTGGTGCTCCTTTGGCAACGCATCCGCATGTTGACAAGATAGCATTTACGGGCAGCACGCTTACAGGGAGCAAGATAATGGCTTCTGCAGCTCAACTGGTCAAGCCCGTTTCACTCGAGCTTGGTGGAAAAAGTCCAATTATCGTTTTTGAGGACGTCGACTTGGAGAAAGCTGCCGAATGGACGGCTTTCGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCAACATCGCGTCTTCTTATACATGAAAGTATTGCCAGTGAATTTTTGGAGAAGCTGGTACAGTTGTGCAGAAACATTAAAATATCAGATCCCTTGGAAGATGGTTGTCGGCTTGGCCCTGTCGTTAATGGAGGGCAGTACGATAAAATATTGAAGTTCATCTCAACTGCCAAGAGTGAAGGTGCAACTATTCTCTCCGGCGGGGGTCGTCCTCAGCATCTCAAGAAAGGGTTCTTTATTGAACCGACCATCATAACCAACGTGACGACATCTATGCAAATCTGGAGAGAAGAAGTTTTTGGACCAGTAATTTGTGTCAAAACGTTCAGAACCGAAGACGAAGCAATTGAATTAGCAAATGATAGCCAATATGGATTAGGTTCTGCTGTAATCTCAAATGATCTAGAAAGGTGTGATCGTATCTCAAAGGCTTTCGAGTCAGGTATCGTATGGATCAATTGCTCCCAACCGTGTTTCTGTCAAGCCCCGTGGGGAGGCACCAAGCGTAGCGGCTTCGGTCGTGAATTAGGCGAATGGGGACTCGATAATTATCTGAGCGTGAAGCAGGTTACACAGTACGTCTCCAACGAGCCATGGGGGTGGTATCAAGCTCCTTCAAAACTA 1509 47.25 MAVLIPSRQLFIDGEWREPVLKKRIPIINPATEEIIGDIPAATAEDVELAVNAARRALDKKKGGEWASSSGAFRAKYLRSIAAKVVEKKSGLAKLEAIDGGKPLDEAAWDMDDVAGCFEYYADLAEALDAKQKTPLSIPMDTFKSYVLKEPIGVVGLITPWNYPLLMASWKVAPALAAGCAAILKPSELTSVTCLELAEICSSIGLPPGVLNVLTGYGPEAGAPLATHPHVDKIAFTGSTLTGSKIMASAAQLVKPVSLELGGKSPIIVFEDVDLEKAAEWTAFGCFWTNGQICSATSRLLIHESIASEFLEKLVQLCRNIKISDPLEDGCRLGPVVNGGQYDKILKFISTAKSEGATILSGGGRPQHLKKGFFIEPTIITNVTTSMQIWREEVFGPVICVKTFRTEDEAIELANDSQYGLGSAVISNDLERCDRISKAFESGIVWINCSQPCFCQAPWGGTKRSGFGRELGEWGLDNYLSVKQVTQYVSNEPWGWYQAPSKL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42322685 42326894 - Bma030526 Bma12g01022 92448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01022 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Bma12g01022 503 SUPERFAMILY ALDH-like 5 490 IPR016161 GO:0016491
Bma12g01022 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 500 - -
Bma12g01022 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Bma12g01022 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Bma12g01022 503 Pfam Aldehyde dehydrogenase family 16 485 IPR015590 GO:0016491
Bma12g01022 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 1 500 - -
Bma12g01022 503 CDD ALDH_F10_BADH 27 487 - -
Bma12g01022 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01022 K00130 betB, gbsA; betaine-aldehyde dehydrogenase [EC:1.2.1.8] - qsu:112020174 885.945
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00481 Bma-Chr7:5816668 Bma12g01022 Bma-Chr12:42322685 1.11E-125 dispersed
Bma11g00506 Bma-Chr11:6312388 Bma12g01022 Bma-Chr12:42322685 1.27E-110 dispersed
Bma04g01129 Bma-Chr4:28035143 Bma12g01022 Bma-Chr12:42322685 8.51E-60 transposed
Bma06g00962 Bma-Chr6:46029103 Bma12g01022 Bma-Chr12:42322685 1.88E-56 transposed
Bma12g00574 Bma-Chr12:24926926 Bma12g01022 Bma-Chr12:42322685 1.31E-97 transposed
Bma12g01022 Bma-Chr12:42322685 Bma08g00185 Bma-Chr8:2251663 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g683 . . . . . . . Bma12g01022 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma07g00481 . 6 502 Aldehyde Dehydrogenase Gene Family AT3G24503 72.1 2.2e-216 748.4
Bma01g01773 . 8 505 Aldehyde Dehydrogenase Gene Family AT3G24503 70.2 2.6e-209 724.9
Bma06g01043 . 1 506 Aldehyde Dehydrogenase Gene Family AT3G24503 67.5 2.0e-201 698.7
Bma11g00506 . 1 440 Aldehyde Dehydrogenase Gene Family AT3G24503 72.8 2.0e-193 672.2
Bma01g00407 . 1 467 Aldehyde Dehydrogenase Gene Family AT3G24503 68.2 4.3e-188 654.4
Bma01g00054 . 36 540 Aldehyde Dehydrogenase Gene Family AT3G24503 54.2 5.1e-157 551.2
Bma01g00054 . 1 540 Aldehyde Dehydrogenase Gene Family AT3G48000 76.3 8.8e-248 852.8
Bma07g00481 . 5 502 Aldehyde Dehydrogenase Gene Family AT3G48000 56.0 1.2e-164 576.6
Bma01g01773 . 7 505 Aldehyde Dehydrogenase Gene Family AT3G48000 55.9 1.1e-162 570.1
Bma06g01043 . 17 506 Aldehyde Dehydrogenase Gene Family AT3G48000 54.5 5.3e-160 561.2
Bma01g00407 . 1 467 Aldehyde Dehydrogenase Gene Family AT3G48000 54.4 2.0e-151 532.7
Bma11g00506 . 2 440 Aldehyde Dehydrogenase Gene Family AT3G48000 56.7 1.4e-149 526.6
Bma01g00054 . 1 384 Aldehyde Dehydrogenase Gene Family AT1G23800 77.5 1.2e-172 602.8
Bma06g01043 . 17 350 Aldehyde Dehydrogenase Gene Family AT1G23800 55.1 3.2e-101 365.5
Bma07g00481 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 5.5e-101 364.8
Bma01g01773 . 1 349 Aldehyde Dehydrogenase Gene Family AT1G23800 51.9 5.2e-99 358.2
Bma01g00407 . 1 311 Aldehyde Dehydrogenase Gene Family AT1G23800 55.6 8.5e-94 340.9
Bma11g00506 . 2 284 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 7.7e-87 317.8
Bma04g00013 . 7 481 Aldehyde Dehydrogenase Gene Family AT4G34240 62.1 1.5e-175 612.8
Bma06g00492 . 49 403 Aldehyde Dehydrogenase Gene Family AT4G34240 65.4 1.6e-129 459.9
Bma04g00013 . 68 479 Aldehyde Dehydrogenase Gene Family AT1G44170 72.6 2.3e-179 625.2
Bma11g00290 BCT 67 481 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 5.7e-117 417.9
Bma07g00256 BCT 60 474 Aldehyde Dehydrogenase Gene Family AT1G44170 51.3 6.9e-115 411.0
Bma06g00107 . 77 482 Aldehyde Dehydrogenase Gene Family AT1G44170 50.7 1.2e-114 410.2
Bma06g00492 . 145 403 Aldehyde Dehydrogenase Gene Family AT1G44170 69.1 1.5e-101 366.7
Bma06g00107 . 1 484 Aldehyde Dehydrogenase Gene Family AT4G36250 63.1 7.8e-187 650.2
Bma11g00290 BCT 1 483 Aldehyde Dehydrogenase Gene Family AT4G36250 54.5 2.6e-158 555.4
Bma07g00256 BCT 1 476 Aldehyde Dehydrogenase Gene Family AT4G36250 53.7 4.3e-153 538.1
Bma05g00591 . 1 490 Aldehyde Dehydrogenase Gene Family AT1G79440 75.3 2.8e-222 768.1
Bma12g00574 . 1 477 Aldehyde Dehydrogenase Gene Family AT1G79440 77.2 4.5e-212 734.2
Bma12g00367 . 2 489 Aldehyde Dehydrogenase Gene Family AT1G79440 70.0 3.7e-198 688.0
Bma08g00029 . 12 503 Aldehyde Dehydrogenase Gene Family AT2G14170 81.9 8.5e-236 813.1
Bma09g00142 . 1 396 Aldehyde Dehydrogenase Gene Family AT2G14170 61.5 3.2e-142 502.3
Bma12g01022 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.8 1.5e-246 848.6
Bma08g00185 . 1 528 Aldehyde Dehydrogenase Gene Family AT1G74920 76.9 7.6e-246 846.3
Bma12g01022 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 78.7 5.7e-249 856.7
Bma08g00185 . 1 528 Aldehyde Dehydrogenase Gene Family AT3G48170 75.2 3.8e-245 844.0
Bma06g00962 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 88.3 2.0e-262 901.4
Bma04g01129 . 1 555 Aldehyde Dehydrogenase Gene Family AT3G66658 81.3 3.8e-276 947.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007146 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 3 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01022 Bma_Chr12 FPKM 13.894855 13.380116 18.455328 18.447674 13.588161 11.333953 14.151419 35.153061 33.659687 34.22768