Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01022 ATGGCGGTTCTGATTCCCAGTAGACAGCTTTTCATCGATGGAGAATGGCGGGAACCAGTTCTTAAGAAACGCATCCCCATCATCAATCCTGCCACAGAAGAAATTATCGGGGATATCCCTGCAGCTACTGCGGAGGATGTAGAGCTAGCTGTAAATGCAGCTAGAAGAGCCCTCGACAAGAAAAAGGGGGGTGAATGGGCCTCTTCTTCCGGTGCTTTTCGTGCTAAGTATTTACGCTCCATTGCTGCCAAGGTAGTGGAGAAGAAATCCGGATTGGCAAAGCTCGAAGCGATTGATGGTGGAAAACCTTTGGACGAAGCTGCATGGGATATGGATGATGTGGCCGGGTGTTTTGAGTACTACGCAGACCTTGCTGAAGCCTTGGATGCTAAGCAGAAGACACCACTTTCTATCCCTATGGATACATTCAAGAGCTATGTTCTTAAGGAACCCATTGGAGTGGTTGGGTTGATTACTCCATGGAATTATCCTCTACTGATGGCTTCATGGAAAGTGGCTCCTGCATTGGCTGCTGGATGTGCTGCGATACTCAAGCCATCCGAACTTACTTCCGTGACTTGTTTGGAGCTGGCTGAAATATGTAGCAGTATCGGCCTTCCTCCTGGTGTTCTCAATGTTTTGACTGGTTATGGTCCCGAAGCTGGTGCTCCTTTGGCAACGCATCCGCATGTTGACAAGATAGCATTTACGGGCAGCACGCTTACAGGGAGCAAGATAATGGCTTCTGCAGCTCAACTGGTCAAGCCCGTTTCACTCGAGCTTGGTGGAAAAAGTCCAATTATCGTTTTTGAGGACGTCGACTTGGAGAAAGCTGCCGAATGGACGGCTTTCGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCAACATCGCGTCTTCTTATACATGAAAGTATTGCCAGTGAATTTTTGGAGAAGCTGGTACAGTTGTGCAGAAACATTAAAATATCAGATCCCTTGGAAGATGGTTGTCGGCTTGGCCCTGTCGTTAATGGAGGGCAGTACGATAAAATATTGAAGTTCATCTCAACTGCCAAGAGTGAAGGTGCAACTATTCTCTCCGGCGGGGGTCGTCCTCAGCATCTCAAGAAAGGGTTCTTTATTGAACCGACCATCATAACCAACGTGACGACATCTATGCAAATCTGGAGAGAAGAAGTTTTTGGACCAGTAATTTGTGTCAAAACGTTCAGAACCGAAGACGAAGCAATTGAATTAGCAAATGATAGCCAATATGGATTAGGTTCTGCTGTAATCTCAAATGATCTAGAAAGGTGTGATCGTATCTCAAAGGCTTTCGAGTCAGGTATCGTATGGATCAATTGCTCCCAACCGTGTTTCTGTCAAGCCCCGTGGGGAGGCACCAAGCGTAGCGGCTTCGGTCGTGAATTAGGCGAATGGGGACTCGATAATTATCTGAGCGTGAAGCAGGTTACACAGTACGTCTCCAACGAGCCATGGGGGTGGTATCAAGCTCCTTCAAAACTA 1509 47.25 MAVLIPSRQLFIDGEWREPVLKKRIPIINPATEEIIGDIPAATAEDVELAVNAARRALDKKKGGEWASSSGAFRAKYLRSIAAKVVEKKSGLAKLEAIDGGKPLDEAAWDMDDVAGCFEYYADLAEALDAKQKTPLSIPMDTFKSYVLKEPIGVVGLITPWNYPLLMASWKVAPALAAGCAAILKPSELTSVTCLELAEICSSIGLPPGVLNVLTGYGPEAGAPLATHPHVDKIAFTGSTLTGSKIMASAAQLVKPVSLELGGKSPIIVFEDVDLEKAAEWTAFGCFWTNGQICSATSRLLIHESIASEFLEKLVQLCRNIKISDPLEDGCRLGPVVNGGQYDKILKFISTAKSEGATILSGGGRPQHLKKGFFIEPTIITNVTTSMQIWREEVFGPVICVKTFRTEDEAIELANDSQYGLGSAVISNDLERCDRISKAFESGIVWINCSQPCFCQAPWGGTKRSGFGRELGEWGLDNYLSVKQVTQYVSNEPWGWYQAPSKL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42322685 42326894 - Bma030526 Bma12g01022 92448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01022 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Bma12g01022 503 SUPERFAMILY ALDH-like 5 490 IPR016161 GO:0016491
Bma12g01022 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 500 - -
Bma12g01022 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Bma12g01022 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Bma12g01022 503 Pfam Aldehyde dehydrogenase family 16 485 IPR015590 GO:0016491
Bma12g01022 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 1 500 - -
Bma12g01022 503 CDD ALDH_F10_BADH 27 487 - -
Bma12g01022 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00481 Bma-Chr7:5816668 Bma12g01022 Bma-Chr12:42322685 1.11E-125 dispersed
Bma11g00506 Bma-Chr11:6312388 Bma12g01022 Bma-Chr12:42322685 1.27E-110 dispersed
Bma04g01129 Bma-Chr4:28035143 Bma12g01022 Bma-Chr12:42322685 8.51E-60 transposed
Bma06g00962 Bma-Chr6:46029103 Bma12g01022 Bma-Chr12:42322685 1.88E-56 transposed
Bma12g00574 Bma-Chr12:24926926 Bma12g01022 Bma-Chr12:42322685 1.31E-97 transposed
Bma12g01022 Bma-Chr12:42322685 Bma08g00185 Bma-Chr8:2251663 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01022 K00130 - qsu:112020174 885.945