Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01030 ATGGGTGTTGCAGAGAGAACCTCTTTAGCCGTCTCGAACATTCCCCATACAGCCACAGCCAAAGACCTCCTGACTTTCCTCGAATGCAAACTCGGAACCGATTCCGTATACGCCGTCGAAATCTTCACCGAGCGGAAGAACTGGAAGTCTCGGGGCTTTGGCAGGGTCCAGTTCTCGACCCTCGAAGCAAAATCAGAAGCCCAGAGACTGTCTCTTCAAAACAGCCTCGTTTTCAACTCTCGCAACCTCAGCCTCGCCGAAACCTACGACGAGATCGTAGTTAGGCCTGTACACGCCAGAAATCGGACCGAAAACGGGGTTTTGCGAGTGGGTTTCATGGTGAGAGAGGATTGCATGAGTGTTCTGGAGAGTTGGGAGGATGTGAGAGCTTGGGTTATGCCCGAGAGGAGGAGAGTCGATTTTTGGGTGTGGCAAAATGGAGAGTGCTATAAGCTTGAGGTTTTGTTTGAGGAGATTTTGGAGGCGACTGGATGTTGTTTGGGCGGTGATGAACTGGATGCTCTCCTTTTGAAGGTAATCTTCTAA 546 50.73 MGVAERTSLAVSNIPHTATAKDLLTFLECKLGTDSVYAVEIFTERKNWKSRGFGRVQFSTLEAKSEAQRLSLQNSLVFNSRNLSLAETYDEIVVRPVHARNRTENGVLRVGFMVREDCMSVLESWEDVRAWVMPERRRVDFWVWQNGECYKLEVLFEEILEATGCCLGGDELDALLLKVIF 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42381619 42382164 + Bma008378.1 Bma12g01030 92456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01030 181 Gene3D - 2 92 IPR012677 -
Bma12g01030 181 PANTHER RNA-DEPENDENT RNA POLYMERASE 5 180 IPR007855 GO:0003968
Bma12g01030 181 SUPERFAMILY RNA-binding domain, RBD 7 115 IPR035979 GO:0003676
Bma12g01030 181 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 5 180 - -
Bma12g01030 181 CDD RRM_SF 11 85 - -
Bma12g01030 181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 90 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01030 K11699 RDR, RDRP; RNA-dependent RNA polymerase [EC:2.7.7.48] - zju:107418475 259.996
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g714 . . Bda06g00585 . . . . Bma12g01030 . . Cma10g00138 . Car10g00129 . Sed08g0142 . . Bhi02g00421 Tan09g2226 Cmetu02g1382 . Hepe09g0188 . . Cla06g01649 Cam06g1834 Cec06g1883 Cco06g1889 Clacu06g1793 Cmu06g1735 Cre06g2553 . . Cone13ag0129 . . . . . . . . . Bpe07g00826 . . . . Cmo10g00144 . . . . . . Cpe18g00835 . . . . . . . . . . . . . . Lsi06g01537 Csa01g00166 Chy02g02565 Cme02g01954
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012365 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01030 Bma_Chr12 FPKM 10.195406 11.64832 18.140062 18.573986 7.935322 7.143148 7.502519 13.218361 13.410896 14.257777