Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01034 ATGGAAACCCAAGTGCAAACTGAAGTTTCAGATCATTCAAACATGAAGCACTCGTCGTCCAAAAACTCGGATGCGTCCGCTCATCTTGATTCGCCTCACTCTCCTTTACGATTCCATTCTCCTCTTCGATCCGACGCCGGTGATCCGCCTGAAATGTCTCCCTACGCCTCGCCTCAGAATTCACCGGATAAGGTCTATGAAAACCCCAAGAGGGTCATTGCCGTCGATAAGACCACCACTCAGTCCCCGCCCAAGCTGACTCCGTTAGCCGACGGCCAAAGACCGCCGGAAAACCACCACGCGGCGCTGGCGAAGTCTCCGTCGCCTGTGGTGATGTTCAATAGAGCGGCGAAGGATGAGATTCATCCTTCGGTGACTAAGGTGGGGCCGGCTGGAGTCGGAGGAGGTGATGACGGTGATGGCGGCAGGTCATCTCGAGGTTTGAGTGCTGTTCTCAGGAGATCAAGGAAGGACGAGATGGTGAAGAGGGCGGCGTTGGGGTTTAGACTGAGTGAGGTGGTGCTATGCTTGATTTCGTTTTCTGTTATGGCGGCGGATAAGACTGATGGATGGAGCGGTGACTCCTTCGATCGGTACAAGGAATATAGATATTGTCTCTCGGTGACGATTATAGCATTTGTATACTCGGGGTTTCAGGCGTATGATCTTGTCTACAATCTCTTCACGGGGAAACAATTCTTCCATCATTATCTCCACAGTCACTTCGATTTTCTCATGGATCAGATATTGGCATATCTGCTCATATCGGCCTCGTCATCTGCGGCCACTCGAGTCGATGACTGGCAATCAAACTGGGGGAAAGACGAGTTCACCGAGATGGCTAGTGCGTCGGTGAGCATGGCCTTCTTAGCTTTCATTGCCTTCGCAATTAGCTCGCTAATCTCCGGTTACAACCTCTGTTCTAGGTGA 930 51.61 METQVQTEVSDHSNMKHSSSKNSDASAHLDSPHSPLRFHSPLRSDAGDPPEMSPYASPQNSPDKVYENPKRVIAVDKTTTQSPPKLTPLADGQRPPENHHAALAKSPSPVVMFNRAAKDEIHPSVTKVGPAGVGGGDDGDGGRSSRGLSAVLRRSRKDEMVKRAALGFRLSEVVLCLISFSVMAADKTDGWSGDSFDRYKEYRYCLSVTIIAFVYSGFQAYDLVYNLFTGKQFFHHYLHSHFDFLMDQILAYLLISASSSAATRVDDWQSNWGKDEFTEMASASVSMAFLAFIAFAISSLISGYNLCSR 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42420700 42422133 + Bma008382.1 Bma12g01034 92460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01034 309 Pfam Casparian strip membrane protein domain 161 294 IPR006702 -
Bma12g01034 309 MobiDBLite consensus disorder prediction 1 102 - -
Bma12g01034 309 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 88 308 - -
Bma12g01034 309 MobiDBLite consensus disorder prediction 125 146 - -
Bma12g01034 309 PANTHER CASP-LIKE PROTEIN 4A3 88 308 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01034 - - - jre:108991478 351.288
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00168 Bma12g01034 CCT
Bma08g00168 Bma12g01034 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00289 Bma-Chr3:2186399 Bma12g01034 Bma-Chr12:42420700 1.09E-06 dispersed
Bma03g00295 Bma-Chr3:2206375 Bma12g01034 Bma-Chr12:42420700 2.59E-09 dispersed
Bma01g00980 Bma-Chr1:9664804 Bma12g01034 Bma-Chr12:42420700 1.15E-60 wgd
Bma12g01034 Bma-Chr12:42420700 Bma08g00168 Bma-Chr8:2065971 1.10E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g737 . . Bda06g00592 Bda15g00571 Bpe12g00594 . . Bma12g01034 . . Cma10g00127 Cma11g00098 Car10g00118 Car11g00098 Sed08g0128 . Cpe04g01551 Bhi02g00437 Tan09g2240 Cmetu09g0010 . Hepe09g0197 . . Cla06g01659 Cam06g1844 Cec06g1895 Cco06g1900 Clacu06g1803 . Cre06g2563 . . Cone13ag0136 . . . . . Blo13g00056 Blo15g00270 . . Bpe07g00834 . . Bma08g00168 . Cmo10g00133 Cmo11g00098 . . . . . . . . . . . . . . . . . . . . Lsi06g01549 Csa01g00155 Chy02g02575 Cme02g01965
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006246 2 1 1 2 2 1 2 1 1 1 1 0 2 1 1 2 0 1 1 1 1 1 1 1 1 1 1 4 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01034 Bma_Chr12 FPKM 2.007412 2.479025 3.87571 3.462441 4.32014 3.577413 3.614173 9.66545 10.422198 10.082629