Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01035 ATGGCCACTCAGTCTGCTCCTCCAAACCCGTTCAACAACAATATTCCGAATCAGGATACACAAGTGGCACAAGCAATGAATGAGGATCAGGTGGAAGAGAAAGAGGCGAACAAACAGACTTCTACGGGATCTGTGTTTGTGAGCTCGGAACCAGTGCGAGAGGAGCAAGTTCAAAATGCAGTAAAGTTCCTTTCACACCCCAAAGTCAGTGGCTCTCCAGTCATGTACAGAAGGTCATTTCTTGAGAAGAAGGGTCTCACAAAGGAAGAGATTGATGAAGCATTTAGACGTGTGCCTGATCCATCTCCAACAGCACATTCATCCAACATAAATAATGATGGGCAGGGGAAATTCCCATCAAATGTTCAGAGGCAGGCCCCGACGCAAACTTTGCAGTTTGTAACTCCTGGTCCTTCTGGCGTTGTTTCCTCAGTGGGTAGTGCAAGACGGTCTAGATTTCAGTGGACTCATGCTGTTTATGCTGTAGGAATATTGGCCATTACAGGTGCAGGATCAGTTTTGATAATTAAGAAAGCAATAGTTCCGAGGTTGAAATCTTGGATACGAAAGATTGTATTGGAAGAAGCTGATGACCTTGTAAAGAAAATTGATGCAAAACCTAATTTGGCCGAAGAATCAGCAGCTGCTGCAAAAGCAGCTGCAGCTGCAGCAACAGACGTGGCCAAAGCTACCCAGGAAATGTTTTATTCAAAAAACGAAGAGAGAAGAAAATTTGAGGAACTTGTCAACTTGTTAGATGAACAAGTACGAGAAATGAAGGTTATGACTAGTACACTACAAAGATTGGAAGGACAAAATAATGGCCAGGGAAGAACATCTGCTGGCTATCAAGAAGATCATCGACCCGCTGTTTCAAATTCTAAGCAACAATACGTGAACGGAAAGACAGAGTACGGCACCCGATCAGTGAGATCATCCTCACCTCCCACGACTGTCGAACCCCAATCTGCACCGCACTCAAAGTCATATACGGAGATTATGGCCATGGTCCAAAGAGGAGAAAAACCTTCAAATATCAGAGATATCAATGATCAACCCCCAAACCCAAATCAGCAGCCATCAAATCCTCGCTTGGCTCCAAGAACTAAGTCTTGGGAAGTTGGCCTCCCTCAACAAAGCTCACACCCTTTCCTCCAGTCTCAAGGAAGTGGAGAAGCTTTGAATCCCTTGGTACAAGATAGTTGGCATCGCAACAATGTCAGGATCTCGGAAGTTGTAAACGAAGACGAGCCAAAAACAGGATCCAATGCATCGGAACCATTAGCCCGTCGCATGTGGGTCCCTCCCCAGGCACCCGCAGTGGCGATAGCGGAAGCAGTCGAAGCAATCCGACGGCCTAAAACCTCGGTTCAGAAAGAACAAACGAACGATGAGCGGTTTTTAACGCGTGGAAATGTTACTGACGAGTTGCAGAGGATCACGAAAGTATCCGAATTCGGTGGAGCCGACGATACCGGGAACGGATTGAGCTCAAACGAAATACAAGAAAACAGTTTTGAAGGATAA 1527 45.84 MATQSAPPNPFNNNIPNQDTQVAQAMNEDQVEEKEANKQTSTGSVFVSSEPVREEQVQNAVKFLSHPKVSGSPVMYRRSFLEKKGLTKEEIDEAFRRVPDPSPTAHSSNINNDGQGKFPSNVQRQAPTQTLQFVTPGPSGVVSSVGSARRSRFQWTHAVYAVGILAITGAGSVLIIKKAIVPRLKSWIRKIVLEEADDLVKKIDAKPNLAEESAAAAKAAAAAATDVAKATQEMFYSKNEERRKFEELVNLLDEQVREMKVMTSTLQRLEGQNNGQGRTSAGYQEDHRPAVSNSKQQYVNGKTEYGTRSVRSSSPPTTVEPQSAPHSKSYTEIMAMVQRGEKPSNIRDINDQPPNPNQQPSNPRLAPRTKSWEVGLPQQSSHPFLQSQGSGEALNPLVQDSWHRNNVRISEVVNEDEPKTGSNASEPLARRMWVPPQAPAVAIAEAVEAIRRPKTSVQKEQTNDERFLTRGNVTDELQRITKVSEFGGADDTGNGLSSNEIQENSFEG 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42428588 42432305 + Bma008383.1 Bma12g01035 92461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01035 508 Gene3D - 45 110 IPR036388 -
Bma12g01035 508 MobiDBLite consensus disorder prediction 102 117 - -
Bma12g01035 508 MobiDBLite consensus disorder prediction 491 508 - -
Bma12g01035 508 Pfam Family of unknown function (DUF5572) 325 374 - -
Bma12g01035 508 MobiDBLite consensus disorder prediction 265 329 - -
Bma12g01035 508 MobiDBLite consensus disorder prediction 97 117 - -
Bma12g01035 508 MobiDBLite consensus disorder prediction 344 368 - -
Bma12g01035 508 MobiDBLite consensus disorder prediction 409 428 - -
Bma12g01035 508 Coils Coil 238 272 - -
Bma12g01035 508 MobiDBLite consensus disorder prediction 1 53 - -
Bma12g01035 508 MobiDBLite consensus disorder prediction 1 27 - -
Bma12g01035 508 MobiDBLite consensus disorder prediction 37 53 - -
Bma12g01035 508 Pfam Pex14 N-terminal domain 53 97 IPR006785 -
Bma12g01035 508 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14-LIKE 8 499 - -
Bma12g01035 508 MobiDBLite consensus disorder prediction 484 508 - -
Bma12g01035 508 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14 8 499 IPR025655 GO:0005515|GO:0005778|GO:0016560
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01035 K13343 PEX14; peroxin-14 - jre:108991475 520.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01035 Bma-Chr12:42428588 Bma08g00165 Bma-Chr8:2041998 1.38E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g746 . . . . . . . Bma12g01035 . . . Cma11g00095 Car10g00115 Car11g00095 . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00057 Blo15g00268 . . . . . . . . Cmo11g00095 . . . . . . . . . . . . . . . . . . . . . . . Cme02g01981
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005495 1 2 2 2 1 0 2 0 1 1 1 0 1 1 1 1 0 3 1 0 1 2 1 2 2 0 2 5 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01035 Bma_Chr12 FPKM 14.0 15.593107 0.146635 0.104063 0.970783 2.06755 1.679881 5.89599 5.254797 4.730408