Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01038 ATGAGAATGGAAAACTCAAAATACCTAGAAACCCTAGAAATTGAAGACGCCGGGGGTTTGGTTGATGAAAATTACGTGGTACTTAATTTCTGTGATAATGGACATAAAGTTGGTAATGCCATAGTTGAAGATCAAGAAGTGAAAGTGAGAAAAAATGTTGAAGACGAAGATTTGGATGTAAAGGTAGGTTTGAAAAAATGCAATGCAGCTGGTTTTGAGAAGTTTCCTTCGCTTAACTGTGGATTTGGTATGGTCAAAACGGATTCAGTGCAAATGATAACGGACGAAAGTTGCCATTTGAAAACTGAACTGTTTGTGGCGGTTGAAGGAATGGAAAAGGGTAAGGCTGTGGAATTGGAGAATGTTGATTCAAGTGCAAAGACAGAAGTTTCTGAAGATATCTGTTCATTTGTATTTGATTCTTCTGGTATTAATCAGGATGGAGCTGAGTTTTTGAATGTTATGAATGAAGAAATATCACCGAAAGCTGAGGATGAAATGCAGGTGATGGAGAATGGTGACAAAAATAAGTTCTCTGTGGGTGACATTATTTGGGTTAGGACCAACAGCCAAAAATGGTGGCCTGGAAAGATCAACAATATAGTAGAAGCATCAAAATGTGTAGACAATGACCAAAGGGATTGCTTTACAGTTTATTATCTTGGTAGCAACCATATCACTAAGCGATTTGCTTTCCAGCTCAAGCCTTTTCACGAACATTTTAAGCAATTTTCGCAGAACATCAAATCAAAAGGCTTCCTCAAAGCTCTAAAAGAGGCCGTGAATGAGTTTTCGGTCCATTATTTTGTACCTACAGTTTTTCTGTCACATATTAAAAGCCTTGCAAGTGTAGTTTCTGCACCTAATCCTCTTGAATTAGCAGCCACAACAAATCAATTATCCGCCGCCTACCAATTTTTGGGTCGCTACCAGTTGCCTGCACATCAACTCGTAGATCCAAACAGGGCTCATGATGTGCACGGTAAAAAAGTTCAGTTCACAGTACTGTCTAAACAATCTGATGCTTTACAACAAAAGAGTCCAAGTAAAGAGACTAATGAAAGCCTGATCAAGGTCTCAGAAGGGAGCCACGATAGCGTGGTAGAAAATTTTGGAAGCATAGCTGCTGAAAAGAAAGAAATAGGTAAAAAAAATAGGAGGAAGAGAAGAATTAAAGAAGTTGAAGATATTGATTTAAGTGAAATGACTTCTTGTGGGGATGAAAATGAAAACAGTCAAGTGAAGATGGAATTTGAGTTTGGAGGTGTAGACTGTGGGAGTGAGGGGAAATATGATGATGGCCCTGATTCTAGAGCAAGGAAGAAGAGCAAGTATTTGTCTTATCCATACATAAACTTGGAGCAGAAAGCTGTGTTGGAATCAGGTGAGAGCCATTCTCTCGAGTCCCGTTCAATCTCTAAACGTAGCAGCCTGAACTTCTGGAGGAAATGGTATCATAAATTTGCAAGTGGCGGCAATATGACTTCTGATCCCGAGTTGGCAAATGCATCTTCTGTTGAATTCCTATCTGAACTGCATTTTGCAGCTATGGATTTGTGCCATCCAAAGGGAAACAAAAACTTCGATTCGATTGCATTATTCTTTTCAAAGTTCAGAATGTCGATATTTCATGATGAATCTGTTTATACTGCTGAAGCTTTATCTTCTGGAAGCAATTTGATTGAAAGTGAGAAAAAGAACTCTCAACCTGCTGCTAAAACTGAGAAAAGGAAAAGAAAAGGGCAAGCTGCGTCGAGTAGTTCTATGGCCAAGTCAGAAAATGCATCTGAAATGAATCATCCGCGTAAGATGGAGGAGTTGAGTGGAAATCCTCCAACTTTCTTGGACAGTAAATCTCTAAATATGGACATTCTATCTTCCAAAATAGAAGCCAAAGGAAAAAAAATACGCTCAAAAAGATCGAAGACTAAATGCCCTGCCGGTTTATCAAATGTAGATACCTCCATTACTGCAAGCAGCGTAGTTGTAAATGACTCACTCAACCACAATCCTAAGCAAAAGAAGAGAAAGAAAGATGCAGCAGCCAGTATACCAGATCTAAATGGAATTAATTCCTTATCCAATCTGCTACCTGAAGATGAACAGGCAATGAGCAATGTTGCCTGTCTAGATAAATCCAGGAAAAAGAAGAGGAATAAGAGAGATGAAGTTGTAAAAAATCCAAAAACAACTTACGAGACATTGGATGTGAGTGACAGCCAACAACCAGATTCTTTCTTCATAGATCTGCAGGTGGTTCCTCAGTCAATTGATGAGCTTACTCAGCAGAATGGTTTGGTTGGAAAGGAAAGACCATCTTTCATTCTGGATTTTGGTCAATTAACTAATAGTAATAGTTTTCCAGAAACAGGTGAACAAGAGATTGGCCTGAAAGTTCCAGCTGATATTAACTTAGGGGATAAAAAAAGAAAAAGGCAAAAGAAAGCAACTTCAAAGCCGCCAAATACTAAATTCCCTGCTGGTATACCAGACTTGAATGGGATCACTATTGAACCGAACCCGTCGGCAAAAGAACAAATGCAGAATGGAACTTCGCCTCAACCTAAACCCAAGCGGAGAAGGAGGAAGAAGGGTGAAGGTTTGGACCCTTGA 2613 39.27 MRMENSKYLETLEIEDAGGLVDENYVVLNFCDNGHKVGNAIVEDQEVKVRKNVEDEDLDVKVGLKKCNAAGFEKFPSLNCGFGMVKTDSVQMITDESCHLKTELFVAVEGMEKGKAVELENVDSSAKTEVSEDICSFVFDSSGINQDGAEFLNVMNEEISPKAEDEMQVMENGDKNKFSVGDIIWVRTNSQKWWPGKINNIVEASKCVDNDQRDCFTVYYLGSNHITKRFAFQLKPFHEHFKQFSQNIKSKGFLKALKEAVNEFSVHYFVPTVFLSHIKSLASVVSAPNPLELAATTNQLSAAYQFLGRYQLPAHQLVDPNRAHDVHGKKVQFTVLSKQSDALQQKSPSKETNESLIKVSEGSHDSVVENFGSIAAEKKEIGKKNRRKRRIKEVEDIDLSEMTSCGDENENSQVKMEFEFGGVDCGSEGKYDDGPDSRARKKSKYLSYPYINLEQKAVLESGESHSLESRSISKRSSLNFWRKWYHKFASGGNMTSDPELANASSVEFLSELHFAAMDLCHPKGNKNFDSIALFFSKFRMSIFHDESVYTAEALSSGSNLIESEKKNSQPAAKTEKRKRKGQAASSSSMAKSENASEMNHPRKMEELSGNPPTFLDSKSLNMDILSSKIEAKGKKIRSKRSKTKCPAGLSNVDTSITASSVVVNDSLNHNPKQKKRKKDAAASIPDLNGINSLSNLLPEDEQAMSNVACLDKSRKKKRNKRDEVVKNPKTTYETLDVSDSQQPDSFFIDLQVVPQSIDELTQQNGLVGKERPSFILDFGQLTNSNSFPETGEQEIGLKVPADINLGDKKRKRQKKATSKPPNTKFPAGIPDLNGITIEPNPSAKEQMQNGTSPQPKPKRRRRKKGEGLDP 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42445870 42448582 - Bma008386.1 Bma12g01038 92464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01038 870 MobiDBLite consensus disorder prediction 568 582 - -
Bma12g01038 870 MobiDBLite consensus disorder prediction 800 870 - -
Bma12g01038 870 SUPERFAMILY Tudor/PWWP/MBT 175 272 - -
Bma12g01038 870 Pfam PWWP domain 181 263 IPR000313 -
Bma12g01038 870 PANTHER ALDOLASE-RELATED 21 264 - -
Bma12g01038 870 PANTHER ALDOLASE-RELATED 263 866 - -
Bma12g01038 870 MobiDBLite consensus disorder prediction 561 616 - -
Bma12g01038 870 MobiDBLite consensus disorder prediction 664 691 - -
Bma12g01038 870 MobiDBLite consensus disorder prediction 839 854 - -
Bma12g01038 870 ProSiteProfiles PWWP domain profile. 180 232 IPR000313 -
Bma12g01038 870 Gene3D - 165 269 - -
Bma12g01038 870 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 21 264 - -
Bma12g01038 870 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 263 866 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01038 - - - mcha:111008692 359.762
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00782 Bma12g01038 CCT
Bma03g00782 Bma12g01038 ECH
Bma06g00220 Bma12g01038 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00220 Bma-Chr6:2610352 Bma12g01038 Bma-Chr12:42445870 1.78E-72 dispersed
Bma01g00974 Bma-Chr1:9599972 Bma12g01038 Bma-Chr12:42445870 2.04E-11 wgd
Bma12g01038 Bma-Chr12:42445870 Bma03g00782 Bma-Chr3:7227881 1.14E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g756 Blo04g00735 . Bda06g00598 . . Bpe13g00240 Bma06g00220 Bma12g01038 Cmo13g00917 . . . . . . Cpe20g00243 . . . . . . . . . . . . . . . . . . . . Csa01g00850 . Cme12g01695 . . Bda11g01653 . Bpe07g00839 Bpe15g00637 Bma03g00782 . . . . Cma13g00888 Cma18g00169 Car13g00728 Car18g00160 Cpe09g01026 . Bhi08g01607 Tan05g2010 . Lac10g0448 . . . Cla01g01299 Cam01g1430 Cec01g1465 . Clacu01g1365 Cmu01g1271 Cre01g1265 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004937 3 2 2 3 3 1 2 0 1 0 1 1 2 1 1 1 2 0 2 1 1 1 1 1 1 0 2 2 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01038 Bma_Chr12 FPKM 20.474348 23.490992 21.475475 20.005375 24.318754 21.703386 21.4732 24.127722 26.298058 24.393576