Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01039 ATGAGGCCTCAGATCGTGTTATTTGGAGATTCAATAACCGAGCAATCCTTCCGATTGGGTGGATGGGGGGCTGCTCTTGCTGATACATTCTCTCGCAAGGCTGATATTCTGGTTCGTGGCTATGGCGGATATAATACTCGGTGGGCGTTGTTTTTGCTGCACCATCTCTTCCCTTTGGATGGATCGAGACCTCCTGCTGCCGTGACTATTTTCTTCGGGGCTAACGATGCAGCCATATTAGGGAGGACAAGCCAAAAGCAGCATGTGCCTCTTGAAGAGTACAAGGAGAACATTAGAAACATTGTTCAACATTTGAAGAAATGCTCTCCAACTGTTCTAATTGTGCTAATTACACCCCCACCAGTTGACGAAGAAGGACGAAATCAATATGCAAGATCCTTATACGGTGAGCAAGCGAGGGAGCTCCCGGAAAGGACCAATGAAGTAACAGGGCTCTATGCAAAACAATGCATCGAGTTAGCGAAGGAGATGGACATTCGATCCATCGATCTGTGGTCCAAAATGCAGGAAACGGAAAGTTGGCAGAAGAAATTCCTAAGTGATGGATTGCATTTGACGCCCGAAGGCAATGCAATTGTGCATTATGAAGTTGTGAAAACATTCGAAGAAGCCTGGCTCTCTCCTGCGGAAATGCCTCTCGATTTTCCACATCACTCGGAAATCGATGGAACTATCCCGGAGAAGGCTTTCCAGCAAAACTGCGTA 726 46.83 MRPQIVLFGDSITEQSFRLGGWGAALADTFSRKADILVRGYGGYNTRWALFLLHHLFPLDGSRPPAAVTIFFGANDAAILGRTSQKQHVPLEEYKENIRNIVQHLKKCSPTVLIVLITPPPVDEEGRNQYARSLYGEQARELPERTNEVTGLYAKQCIELAKEMDIRSIDLWSKMQETESWQKKFLSDGLHLTPEGNAIVHYEVVKTFEEAWLSPAEMPLDFPHHSEIDGTIPEKAFQQNCV 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42453818 42456289 + Bma030528 Bma12g01039 92465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01039 242 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE FAMILY PROTEIN, EXPRESSED 1 239 - -
Bma12g01039 242 Gene3D SGNH hydrolase 2 235 IPR036514 -
Bma12g01039 242 CDD Isoamyl_acetate_hydrolase_like 4 207 - -
Bma12g01039 242 PANTHER ISOAMYL ACETATE-HYDROLYZING ESTERASE 1 1 239 IPR045136 -
Bma12g01039 242 Pfam GDSL-like Lipase/Acylhydrolase family 7 199 IPR013830 -
Bma12g01039 242 SUPERFAMILY SGNH hydrolase 3 210 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01039 K23978 IAH1; isoamyl acetate esterase [EC:3.1.1.112] - mnt:21387004 421.779
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00253 Bma-Chr3:1955935 Bma12g01039 Bma-Chr12:42453818 1.24E-50 dispersed
Bma07g00852 Bma-Chr7:28795235 Bma12g01039 Bma-Chr12:42453818 9.01E-30 dispersed
Bma12g01039 Bma-Chr12:42453818 Bma08g01021 Bma-Chr8:49330208 8.87E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g759 . . Bda06g00600 . . . . Bma12g01039 . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0143 . . . . . . Blo15g00266 . . Bpe07g00840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004115 2 2 1 1 1 1 3 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 5 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01039 Bma_Chr12 FPKM 5.523927 6.9268 19.114882 18.279671 8.855241 7.773185 9.913529 3.07605 2.25793 2.635825