Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01040 ATGCAGAGCGCAGCTTTTAATTCGTCGCTTTCACTGCCTCTGCTGAAGCCTGTAAGGCATTCGAATCCTACCTCGGCAGCTGGATTCAGTTTCGTACGTTCCTATTCCGCTTCGTCTAGCTGTAACGAATTTACCGCCTCTGCGAATGTCTCTCTGTCTTCTTCTTCTTCGTTGCCCCGCCGATCATGGTCTTTGTCGTCTTCTTCTTCTTCTTTATTTCCTAAATTTAGGCCTCGGTCCGGTATTACGTCGCTGCGTAATGACTCTGAGTTTAGTCGTTTCGAGGTAAGGGCTACCTCAGTGCCGGAGAGTGCTGGAGAGATCCAGGAATCAAGCAACTTGTTCAAGACGCTGGAGCTTGGAGCGTTGTTCGGCCTCTGGTATATCTCCAACATCTACTTCAATATCTACAATAAGCAGGTGCTGAAGGTATATCCATTCCCTGTTACAGTATCTGCAATTCAATTTGCTATTGGCACTGTGCTTGTGCTTTTTACGTGGGGTTTTAATATCTATAAGAAGCCAAAAGTCAGTGGCTCACAGCTTGCCGCTCTTCTGCCACTGGCAGTTGCTCACTTACTTGGAAACCTTTTTACCAACATGAGTCTTGATAAAGTGGCTGTATCATTTACCCACACAATCAAAGCTTCGGAGCCTTTCTTCTCTGTCATCCTGTCTGCTATATTTCTTGGGGAGAGTCCTACTCTATGGGTGTTTGCTTCCCTTATACCAATTGTTGGTGGTGTGGGATTGGCTTCAGCCACAGAGGCCTCATTTAATTGGTTTGGATTTTGGAGTGCAATGGCGTCCAATTTGACCAATCAATCCCGGAATGTCCTTAGCAAAAAACTCATGATAAAAAAAGAGGATTCATTGGACAATATCACTCTCTTCTCGATAATTACAATCATGTCATTTATTTTCTTAGCTCCGGTGGCTATCTTCATGGAAGGTGTTAAATTTACACCTGCCTATCTGCAGTCTGCAGGATTGAATGTTAGTCAAATATGCAGTAGGTCTCTTCTTGCTGCTTTGTGTTTCCATGCTTATCAACAGGTATCCTATATGATATTGCAGAGGGTATCTCCCGTCACCCACTCGGTCGGAAATTGTGTGAAGCGGGTGGTGGTCATTGTGAGCTCCGTCATCTTCTTCCAAACACCTGTCTCCCCAATCAATACTCTTGGCACCGGAGTGGCTCTTGCAGGAGTTTTCCTTTATTCGAGGGTGAAACGCATTAAAGCGAAGCCCAAGACTGTG 1260 45.24 MQSAAFNSSLSLPLLKPVRHSNPTSAAGFSFVRSYSASSSCNEFTASANVSLSSSSSLPRRSWSLSSSSSSLFPKFRPRSGITSLRNDSEFSRFEVRATSVPESAGEIQESSNLFKTLELGALFGLWYISNIYFNIYNKQVLKVYPFPVTVSAIQFAIGTVLVLFTWGFNIYKKPKVSGSQLAALLPLAVAHLLGNLFTNMSLDKVAVSFTHTIKASEPFFSVILSAIFLGESPTLWVFASLIPIVGGVGLASATEASFNWFGFWSAMASNLTNQSRNVLSKKLMIKKEDSLDNITLFSIITIMSFIFLAPVAIFMEGVKFTPAYLQSAGLNVSQICSRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINTLGTGVALAGVFLYSRVKRIKAKPKTV 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42462244 42465414 - Bma030529 Bma12g01040 92466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01040 420 Pfam Triose-phosphate Transporter family 119 408 IPR004853 -
Bma12g01040 420 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 118 418 IPR004696 GO:0016021|GO:0022857|GO:0055085
Bma12g01040 420 MobiDBLite consensus disorder prediction 53 72 - -
Bma12g01040 420 PANTHER SOLUTE CARRIER FAMILY 35 44 394 - -
Bma12g01040 420 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 44 394 - -
Bma12g01040 420 SUPERFAMILY Multidrug resistance efflux transporter EmrE 163 253 - -
Bma12g01040 420 SUPERFAMILY Multidrug resistance efflux transporter EmrE 304 411 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00100 Bma12g01040 CCT
Bma08g00100 Bma12g01040 ECH
Bma06g00217 Bma12g01040 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00217 Bma-Chr6:2577921 Bma12g01040 Bma-Chr12:42462244 0 dispersed
Bma12g01040 Bma-Chr12:42462244 Bma14g01489 Bma-Chr14:30114838 2.64E-159 dispersed
Bma12g01040 Bma-Chr12:42462244 Bma08g00100 Bma-Chr8:1212884 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01040 K15283 - csv:101203848 555.829