Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01041 ATGCAGGGAGGTACAGAGGACAACAATGGCGGACCCTGGAAGTATCTTGCTGGAACCTCGAAAAATACTTGGAAGCCCGTAGTGACTGCAGACACAACCACCTCATACTACTGGATTAATTGGAGGGTATTGCTTTGTGCTATATGGGTCTTACTTTCAACGACCTTTGCTTTATTCCTCATATTCAAATACGAAGGATATCGAAATGGGAAACGAAATCGGACGGATACCCATCGAGAATCGATCGGATCTTTGTACGACGATGAAACTTGGAAGCCATGTCTTAAAGGAATCCACCCTGCTTGGCTTCTGGTTTTTAGACTTGTTGCCTTCTTTGTTCTTCTTGTTTTGCTCTTGCTCACAGCTTTTGCAGATGTAGGCGGCATATTCTATTTCTATACACAGTGGACTTTTACATTGATCACCATTTATTTTGGGCTTGGATCTTTGCTCTCCATCTGTGGATGCTACAAGTATCATAAGAAAGTTGGTGGGGAAAAAGTTGGTCATGTTGAACACGATGCAGAGCAAGGAGACCTCGGCCACTCTGCTGCATCTCATGCGATGAAAACCTCGAACCTTCACGAAGAGTCTCATCGTGAAACTGCAGGCTTTTGGGGATATCTCTTTCAAATAATATTTCAGATGAATGCAGGTGCTGTCATGCTGACGGATTGCGTCTTTTGGTTCATACTCGTTCCATTTCTCGCCATCAAAGATTACAATCTTAATTTCTTGATCATAAATATGCACACTGTCAATGCGGTGTTTTTACTGGGAGATGCTGCTTTTAATTGCTTGCGGTTTCCATGGTTCCGAATCGGGTATTTCTTTCTTTGGACGATCGTTTATGTTCTTGTCCAATGGGTTGTTCATGCTTGTGTTATTCTCTGGTGGCCTTACCCATTTCTTGACTTGTCCTCTCCATATGCTCCTCTATGGTACTTTTCGGTGGCAGTGATGCATATCCCATGCTACGGAGTGCTGGCTCTGTTGATGAAGCTGAAACACCACATTTTATCGACACGATGCCCGCAATCGAATCAGTGTAGGGGGTGA 1059 43.81 MQGGTEDNNGGPWKYLAGTSKNTWKPVVTADTTTSYYWINWRVLLCAIWVLLSTTFALFLIFKYEGYRNGKRNRTDTHRESIGSLYDDETWKPCLKGIHPAWLLVFRLVAFFVLLVLLLLTAFADVGGIFYFYTQWTFTLITIYFGLGSLLSICGCYKYHKKVGGEKVGHVEHDAEQGDLGHSAASHAMKTSNLHEESHRETAGFWGYLFQIIFQMNAGAVMLTDCVFWFILVPFLAIKDYNLNFLIINMHTVNAVFLLGDAAFNCLRFPWFRIGYFFLWTIVYVLVQWVVHACVILWWPYPFLDLSSPYAPLWYFSVAVMHIPCYGVLALLMKLKHHILSTRCPQSNQCRG 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42467556 42470967 + Bma008387.1 Bma12g01041 92467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01041 352 PANTHER PROTEIN, PUTATIVE-RELATED 22 351 - -
Bma12g01041 352 PANTHER UNCHARACTERIZED 22 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01041 - - - mcha:111008756 523.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00613 Bma-Chr6:32704415 Bma12g01041 Bma-Chr12:42467556 3.53E-117 dispersed
Bma12g01041 Bma-Chr12:42467556 Bma15g00471 Bma-Chr15:5280079 2.18E-70 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g764 . . Bda06g00606 . . . . Bma12g01041 Cmo13g00912 Cmo18g00133 . . . . . Cpe20g00248 . . . . . . . . . . . . . . . Cone2ag0912 Cone16ag0096 . Cone19ag0143 Lsi02g00379 Csa01g00858 . Cme12g01688 . . . . Bpe07g00844 . . . Sed08g2518 . . Cma13g00882 Cma18g00175 Car13g00722 Car18g00165 . . Bhi08g01620 Tan05g2000 Cmetu12g1450 Lac10g0457 Hepe07g2221 . . Cla01g01305 . . Cco01g1464 Clacu01g1370 Cmu01g1277 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000506 3 9 1 2 2 3 5 3 3 3 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 3 3 11 8 4 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01041 Bma_Chr12 FPKM 9.236658 11.664205 10.967638 10.600576 16.10236 14.173169 17.13427 11.902681 11.449977 11.9139