Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01046 GTTCGGTTCTGTGTAATTCAGGACGATGATTTTGGTGGAGATTTTAACGCAACTCATAACACTAGGCGTTCAGGTAATAAGAGGGGGTTTGGGGATCTCGAGGACGATGAAGATGAATATTTCGTCTCCAATAAGGCTAACTCTAAGGTAGAAGAAACTGCCCCGGGTGTGGCAACAGGGATGATTTTGTCTCTTCGTGAGAGTCTTAAAAGCTGTGAGGATGCCCTTGCAACATGTCGACTTGAAAAAGCAAAGAAAAAGGAAGCTGCTTTTATAGTTACATTTGCCAAACGGGAGCAGGAGATTGCTGAATTGAAGTCGAGTTTTCTAATGCAAAACTTTTTGCCAAATATGCAGGCTGCTGTCCGGGATTTGAAAACTCAACTGAAGCCACTGTCAATGCAGGCAAGGAGGTTATTGTTGGATCCTGCAATTCATGAAGAGTTTACTCGCCTAAAGAATTTGGTTGAGGAGAAAGACAAAAAAGTGAAGGAGCTGCAGGATAATATTGCTGCAGTCAGTTTCACTCCGTCGAGCAAGATGGGGAAAATGCTTATGGCTAAATGTAGGACTCTTCAAGAGGAAAATGAGGAAATAGGAAATCAAGCTGCTGAAGGAAAGATGCATGAATTGGCACTGAAACTTGCTTTGCAGAAATCCCAAAATGCCGAACTCAGAAGTCAGTTTGAAGCATTTGCTCATATAACCCTCCTTTTCTTTGTACACAATCGTAATTGCAATTATTTTTTGGCTTTCCATCTTGCAGCATTGCACAAGCACATGGATGGGCTGACCAATGATGTGGAAAGATCAAATGAAATGGTAATCATCTTGCAGGAGAAACTAGAGGAGAAGGATCGACAGCTTCAAAAATTAAAACAAGATCAGAAGGAGAAGAGTGTAATTGAGGAGGAAAATGTGGATTCAGATTTGGCAGATAGGAAAGAAAGCAACGAGGATGTTGTATCAGGTGAAGCTGCCAATTGA 987 41.64 VRFCVIQDDDFGGDFNATHNTRRSGNKRGFGDLEDDEDEYFVSNKANSKVEETAPGVATGMILSLRESLKSCEDALATCRLEKAKKKEAAFIVTFAKREQEIAELKSSFLMQNFLPNMQAAVRDLKTQLKPLSMQARRLLLDPAIHEEFTRLKNLVEEKDKKVKELQDNIAAVSFTPSSKMGKMLMAKCRTLQEENEEIGNQAAEGKMHELALKLALQKSQNAELRSQFEAFAHITLLFFVHNRNCNYFLAFHLAALHKHMDGLTNDVERSNEMVIILQEKLEEKDRQLQKLKQDQKEKSVIEEENVDSDLADRKESNEDVVSGEAAN 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42531954 42540305 + Bma008392.2 Bma12g01046 92472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01046 328 Coils Coil 208 228 - -
Bma12g01046 328 MobiDBLite consensus disorder prediction 288 328 - -
Bma12g01046 328 PANTHER PROTEIN OF 37 KDA-LIKE PROTEIN, PUTATIVE-RELATED 250 319 - -
Bma12g01046 328 PANTHER PROTEIN OF 37 KDA-LIKE PROTEIN, PUTATIVE-RELATED 7 80 - -
Bma12g01046 328 PANTHER PROTEIN OF 37 KDA-LIKE PROTEIN, PUTATIVE-RELATED 81 232 - -
Bma12g01046 328 MobiDBLite consensus disorder prediction 288 321 - -
Bma12g01046 328 PANTHER WILMS' TUMOR 1-ASSOCIATING PROTEIN 7 80 IPR033757 GO:0000381|GO:0005634|GO:0080009
Bma12g01046 328 Coils Coil 149 169 - -
Bma12g01046 328 Pfam WTAP/Mum2p family 83 232 IPR033757 GO:0000381|GO:0005634|GO:0080009
Bma12g01046 328 PANTHER WILMS' TUMOR 1-ASSOCIATING PROTEIN 250 319 IPR033757 GO:0000381|GO:0005634|GO:0080009
Bma12g01046 328 PANTHER WILMS' TUMOR 1-ASSOCIATING PROTEIN 81 232 IPR033757 GO:0000381|GO:0005634|GO:0080009
Bma12g01046 328 Coils Coil 268 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01046 K22824 WTAP; pre-mRNA-splicing regulator WTAP - zju:107418434 353.984
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g796 . . Bda06g00611 . . . . Bma12g01046 . . Cma10g00110 Cma11g00082 Car10g00099 Car11g00075 Sed08g0092 . Cpe04g01570 Bhi02g00492 Tan09g2284 Cmetu02g1221 . Hepe09g0221 . . Cla06g01683 Cam06g1870 Cec06g1919 Cco06g1924 Clacu06g1825 Cmu06g1768 Cre06g2584 . . Cone13ag0158 Cone19ag0157 . . . . . Blo15g00260 . . Bpe07g00852 . . . . Cmo10g00114 Cmo11g00082 . . . . . Cpe18g00855 . . . . . . . . . . . . . . Lsi06g01575 Csa01g00127 . Cme02g01996
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005496 1 1 1 1 1 2 1 2 2 0 2 2 1 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01046 Bma_Chr12 FPKM 27.467529 28.75502 27.690504 26.468893 34.36998 32.428913 30.500698 35.074497 38.517273 36.028641