Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01049 ATGGCTTCTTCAAGCTCATACAATTCACCATGTGCTGCCTGCAAGTTCCTGAGGAGAAAATGCATGCCGGGGTGCATATTTGCGCCGTACTTCCCTCCGGAGGACCCTCAGAAATTCGCCAACGTTCACAAGATATTCGGAGCAAGCAACGTCACGAAGCTCCTCAACGAGATCCTCCCCAACCAACGGGAGGACGCCGTCAACTCCCTCGCCTACGAGGCTGAGGCAAGGGTACGGGACCCAGTCTACGGCTGCGTCGGAGCCATCTCCTTCCTCCAACGGCAAGTCCAACGCCTCCAGAAGGAGCTCGACGCGGCCAACGCGGAACTCATCCGCTACGCTTGCGCAGATATCCCTTCCGCCATCTCTGCACAGTCTGGGGTGAGTATTTTCAGTCGAAGAGGCGGGAACGGAGGAGGAGGAGGCGGCGGAGGAGGAGGGTACTCTCAACCTCCTCCATTCCCTCTCCCCTACCCACTGCCTTGGAACGATAACGTCGACATCCATGGCGGAGGAGGAGGAGGACAAGGTAGTCTGTGA 540 58.15 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEDPQKFANVHKIFGASNVTKLLNEILPNQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANAELIRYACADIPSAISAQSGVSIFSRRGGNGGGGGGGGGGYSQPPPFPLPYPLPWNDNVDIHGGGGGGQGSL 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42560363 42560902 - Bma008395.1 Bma12g01049 92475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01049 179 MobiDBLite consensus disorder prediction 133 179 - -
Bma12g01049 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 177 - -
Bma12g01049 179 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Bma12g01049 179 Coils Coil 89 116 - -
Bma12g01049 179 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Bma12g01049 179 PANTHER ELONGATED PETIOLULE 1 1 177 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00088 Bma12g01049 CCT
Bma08g00088 Bma12g01049 ECH
Bma06g00210 Bma12g01049 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00414 Bma-Chr6:14605250 Bma12g01049 Bma-Chr12:42560363 9.87E-21 dispersed
Bma06g00422 Bma-Chr6:15286261 Bma12g01049 Bma-Chr12:42560363 2.30E-49 dispersed
Bma06g00210 Bma-Chr6:2517399 Bma12g01049 Bma-Chr12:42560363 1.28E-77 transposed
Bma14g01484 Bma-Chr14:30097229 Bma12g01049 Bma-Chr12:42560363 2.78E-71 transposed
Bma14g01508 Bma-Chr14:30351599 Bma12g01049 Bma-Chr12:42560363 2.88E-71 transposed
Bma12g01049 Bma-Chr12:42560363 Bma08g00088 Bma-Chr8:1029617 1.95E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58168 PF03195 LOB 3.90E-42 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01049 - - tcc:18604002 264.618