Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma12g01049 | ATGGCTTCTTCAAGCTCATACAATTCACCATGTGCTGCCTGCAAGTTCCTGAGGAGAAAATGCATGCCGGGGTGCATATTTGCGCCGTACTTCCCTCCGGAGGACCCTCAGAAATTCGCCAACGTTCACAAGATATTCGGAGCAAGCAACGTCACGAAGCTCCTCAACGAGATCCTCCCCAACCAACGGGAGGACGCCGTCAACTCCCTCGCCTACGAGGCTGAGGCAAGGGTACGGGACCCAGTCTACGGCTGCGTCGGAGCCATCTCCTTCCTCCAACGGCAAGTCCAACGCCTCCAGAAGGAGCTCGACGCGGCCAACGCGGAACTCATCCGCTACGCTTGCGCAGATATCCCTTCCGCCATCTCTGCACAGTCTGGGGTGAGTATTTTCAGTCGAAGAGGCGGGAACGGAGGAGGAGGAGGCGGCGGAGGAGGAGGGTACTCTCAACCTCCTCCATTCCCTCTCCCCTACCCACTGCCTTGGAACGATAACGTCGACATCCATGGCGGAGGAGGAGGAGGACAAGGTAGTCTGTGA | 540 | 58.15 | MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEDPQKFANVHKIFGASNVTKLLNEILPNQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANAELIRYACADIPSAISAQSGVSIFSRRGGNGGGGGGGGGGYSQPPPFPLPYPLPWNDNVDIHGGGGGGQGSL | 179 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 42560363 | 42560902 | - | Bma008395.1 | Bma12g01049 | 92475 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma12g01049 | 179 | MobiDBLite | consensus disorder prediction | 133 | 179 | - | - | |
Bma12g01049 | 179 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 177 | - | - | |
Bma12g01049 | 179 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
Bma12g01049 | 179 | Coils | Coil | 89 | 116 | - | - | |
Bma12g01049 | 179 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 107 | IPR004883 | - | |
Bma12g01049 | 179 | PANTHER | ELONGATED PETIOLULE 1 | 1 | 177 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma08g00088 | Bma12g01049 | CCT | |
Bma08g00088 | Bma12g01049 | ECH | |
Bma06g00210 | Bma12g01049 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma06g00414 | Bma-Chr6:14605250 | Bma12g01049 | Bma-Chr12:42560363 | 9.87E-21 | dispersed | |
Bma06g00422 | Bma-Chr6:15286261 | Bma12g01049 | Bma-Chr12:42560363 | 2.30E-49 | dispersed | |
Bma06g00210 | Bma-Chr6:2517399 | Bma12g01049 | Bma-Chr12:42560363 | 1.28E-77 | transposed | |
Bma14g01484 | Bma-Chr14:30097229 | Bma12g01049 | Bma-Chr12:42560363 | 2.78E-71 | transposed | |
Bma14g01508 | Bma-Chr14:30351599 | Bma12g01049 | Bma-Chr12:42560363 | 2.88E-71 | transposed | |
Bma12g01049 | Bma-Chr12:42560363 | Bma08g00088 | Bma-Chr8:1029617 | 1.95E-89 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58168 | PF03195 | LOB | 3.90E-42 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma12g01049 | - | - | tcc:18604002 | 264.618 |