Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01052 ATGAGACCTGACGCGAATTCTTCCTCAGTTGGGTCGTTTTCGACTTCTTTCATCTTCTCAATCGTGCCGCAGATCGCTTCCAGTCCCGGATTTGGACTCGCCTTTGTTCTCTCCAATACTACCTCTCCTCCCGGGGCATTATCAAGCCAGTACTTCGGCCTCTTCACCGATGCTAAAACACCGTCGGTTGCTCCGCTCCTTGCCGTTGAGTTCGACGTCGGCCAGAATCCTGAGTTCAATGACCCTGACAGCAATCACATTGGAATCAATCTGAACCGGGTTGAGTCGGAGAAAACTCAGACGGCTGGGTATTACAATTCTGCAGGAGATTTTGTTCCGCTTCAGATGAGAACTGGTCAGAATATTCACTCTTGGATCGATTTCGACGGAGGTAACTTCGAAATTAATGTCACGGTAGCGCCGGTAGGGATGACTCGCCCCTCACGGCCAACTTTAACTTTCAAAGATCCGGTCATAGCGAACTACGTCTCTGCCCAAATGTATGTTGGATTTTCTGCATCGAAAACGAACTGGATCGAGGCAAGGAGAGTTTTAGCTTGGAGTTTGAGCGATTCGAGAAATGCAAGAGAAATCAACCGGACGGCTTTTCCAATTTTTGCCCAAGAATCGAATTCTTCTTTATCCTCCGGCGCAGTTGCTGGGATTGTCATTAGTGCTACGGTCTTTTTCATCGTTTTTGCATCTGCGTGGTACTGGCTTTGGCGAAAGAAGAGGTTGAGAGAGGAGAAAGACGAAGAAGTGGAGGATTGGGAGCTGGAGTATTGGCCACATAGATTCTCTTTCGAGGAACTATCTCAGGCGACGGAGAATTTCGCCGACGATCACCTTCTAGGATTTGGAGGATTTGGTAAAGTTTACAAAGGAACTTTACCAAACGACTCAATAGTCGCAGTAAAATGCATAAACCACGATTCAAAGCAAGGGCTAAAGGAATTCATGGCCGAAATCTCAAGTATGGGAAGATTACAGCACAAAAATTTAGTCCAAATGCGAGGATGGTGCAGAAAAGGGAACCAGTTAATGCTCGTTTACGATTATATGCCTAATTCAAGCCTCAACAGGTGGATATTCGGCAAACCAACGAATATCCTTGGGTGGCTCCACCGCCGGAGAATCCTAAACGACGTTGCCGAAGGACTAAACTATCTACACCGGGGATGGGACCAAATAGTGATTCACAGAGACATAAAATCAAGCAACATTCTCCTCGATTCCGAGATGCGAGGGCGGCTCGGGGATTTCGGGCTGGCAAAATTATACCAGCACGGCGGCGTGCCGAACACCACACGAGTCGTCGGAACTTTAGGATACTTGGCTCCGGAGGTAGCTACAACCGCGACGCCGACGGAAGCGAGCGACGTTTACAGCTTTGGGGTGGTGATTCTGGAAGTGGTTTGCGGACGACGGCCGATAGAAATGACGGCTAAGGAAGATGAAGTAGTGCTGGTCGATTGGGTGAGAGATCTGTATGCGAGAGGGAGAGCTAGTGAGGCGGTGGATCGGAGAATGGAGAAAGAATATGACGTGTTGGAAATGGAGATGATTTTGAAACTAGGTTTGTCCTGTTGTCACCCCGATCCGACGCGGCGGCCGACTATGAACGACGTCATCGCTGTATTGTCGAGGGAGAGGACAGTGGCTGCTCGGGCGGTCGTATTATCCGATTTGGCACCGGTCAACGGCATCGTTCCCGGCGACGGAGCCAACACCGGTACGTGA 1740 49.54 MRPDANSSSVGSFSTSFIFSIVPQIASSPGFGLAFVLSNTTSPPGALSSQYFGLFTDAKTPSVAPLLAVEFDVGQNPEFNDPDSNHIGINLNRVESEKTQTAGYYNSAGDFVPLQMRTGQNIHSWIDFDGGNFEINVTVAPVGMTRPSRPTLTFKDPVIANYVSAQMYVGFSASKTNWIEARRVLAWSLSDSRNAREINRTAFPIFAQESNSSLSSGAVAGIVISATVFFIVFASAWYWLWRKKRLREEKDEEVEDWELEYWPHRFSFEELSQATENFADDHLLGFGGFGKVYKGTLPNDSIVAVKCINHDSKQGLKEFMAEISSMGRLQHKNLVQMRGWCRKGNQLMLVYDYMPNSSLNRWIFGKPTNILGWLHRRRILNDVAEGLNYLHRGWDQIVIHRDIKSSNILLDSEMRGRLGDFGLAKLYQHGGVPNTTRVVGTLGYLAPEVATTATPTEASDVYSFGVVILEVVCGRRPIEMTAKEDEVVLVDWVRDLYARGRASEAVDRRMEKEYDVLEMEMILKLGLSCCHPDPTRRPTMNDVIAVLSRERTVAARAVVLSDLAPVNGIVPGDGANTGT 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42625321 42627060 - Bma008401.1 Bma12g01052 92478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01052 579 Gene3D Transferase(Phosphotransferase) domain 1 354 561 - -
Bma12g01052 579 Gene3D - 2 212 - -
Bma12g01052 579 SUPERFAMILY Concanavalin A-like lectins/glucanases 6 190 IPR013320 -
Bma12g01052 579 CDD STKc_IRAK 284 549 - -
Bma12g01052 579 Gene3D Phosphorylase Kinase; domain 1 240 353 - -
Bma12g01052 579 CDD lectin_legume_LecRK_Arcelin_ConA 17 190 IPR001220 GO:0030246
Bma12g01052 579 ProSitePatterns Protein kinases ATP-binding region signature. 284 306 IPR017441 GO:0005524
Bma12g01052 579 Pfam Legume lectin domain 4 200 IPR001220 GO:0030246
Bma12g01052 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 398 410 IPR008271 GO:0004672|GO:0006468
Bma12g01052 579 SUPERFAMILY Protein kinase-like (PK-like) 259 547 IPR011009 -
Bma12g01052 579 SMART serkin_6 278 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g01052 579 ProSiteProfiles Protein kinase domain profile. 278 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g01052 579 PANTHER - 6 566 - -
Bma12g01052 579 Pfam Protein kinase domain 280 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g01052 579 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.1 6 566 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00085 Bma12g01052 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00280 Bma-Chr10:2521552 Bma12g01052 Bma-Chr12:42625321 4.78E-133 dispersed
Bma12g01052 Bma-Chr12:42625321 Bma10g00593 Bma-Chr10:7271495 6.55E-116 dispersed
Bma12g01052 Bma-Chr12:42625321 Bma08g00085 Bma-Chr8:1000536 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66828 PF00069 Pkinase 6.40E-52 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01052 - - jre:108985873 848.195