Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01054 ATCGAAATGGATCCGAATCCGAAAAGCTTCCCAATCCTCTCCTACGTCATGGCTCGAATCCCTACCATTGGACCTCGGACGGCCTCCAATTTCAGCTCCGACCAATACGACATCGAACAGCCGGCTACGGCGTTGCCTCGTCCGGTTTATCCGGCGTCTTCCGGCCAAATCGTCGACCATTTGCCTCATCTATCGGACCCGAATCTCCTGGCTTCTATGACTCGCGCTGTGTCGGACGTGGCTCAGACCCGATCTGTGCTTAAAACTCTCGGTGACAGACCGGACCACGAGACCGTCGACACCGCCAAGGCTAAGCTCGCTGAGATCGAGGCTAATTTGTCTAAACAGCTTGAGGAGAACGTTCTTTCGCCGCGGCCGGTCGAACTGGATCGATTCCAATGGCGAGCGCACCAAGCGGAGAAGGAAATGCAGTGCCGGCAGTTATCGGATAAGGAGAAGCAGATGTATAAAGCGGTTATTCAGTTGGATGAGATGCACGATGCCTATGAGAAGTTGTTGAAGGAAGCGGAAGAACGGTTGGTAAAGATTTACCAGTCGGCGGAACGTGGAGTAGAAGAGGAGGACGTGGCTCCCGCAACTGATGAGATTAATGAGGAGGTGGTTGGGATTCTTCACGATGCGAGTGGGAATCAATTGGAACGCATTGACATTTCTGGCCGCAGGTTGCGCATTTTGCCTGAAGCATTCGGGCAAATTCGTGGTCTTACCGTGCTCAACGTTTCCAGTAATCAACTTGAGGTTCTTCCTGATGCCATAGCTGGTTTGGAGAACCTCGAGGAGCTAAATGCCTCGTCGAATCTTTTGGAGTCCCTTCCAGATTCAATTGGATTGTTGCAAAAGCTGAAATTATTAAATGTTTCTGGAAACAAGTTAACTCACCTTCCTGATTCTATATGCTACTGCAGGTCACTGGTTGAGTTGGATGTAAGCTTTAATGGCGTGACATACTTGCCAACCAACATTGGTTATGAATTGGGAAAATTGCAGAAGCTTTTTGTCCAATTGAACAAGATACGTACTCTTCCTACCTCTGTTTGTGAGATGAGATCTCTGTGCCATCTAGATGCGCATTTCAATGAGCTTCGTGGCCTTCCACTTTCTATAGGGAGATTAGTTAATCTGGAGGCTCTCAACTTGAGCAGTAACTTCAGTGATCTGAAAGAACTTCCCGAGACTTTTGGTGATTTAATCAACCTCAAGGAACTTGACCTCAGCAACAATCAGATTCATGCTCTTCCTGATACATTTGGTCGCCTTGACAATTTAACCAAACTTAACTTGGAGCAAAATCCTATTGTAATTCCACCCTTGGAAGTTGTGAATGAAGGGGTTGAAGCAGTTAAGGTATATATGGCTAAGAGATGGTTTGAACTTCTGGTGGATGAAGAGAAAAAGAGCATGCTTGAAGTGCAAGAAGCAGGACAGACTGGATGGCTGACGCGTAGCTCTTCCTGGCTAAAGAGTTATGCTTCTGGTGTGACGGAATATTTGACATCCCCAAGAGCTCCCAGGGACCCTTATCTCGATCAACAACTATAA 1560 47.44 IEMDPNPKSFPILSYVMARIPTIGPRTASNFSSDQYDIEQPATALPRPVYPASSGQIVDHLPHLSDPNLLASMTRAVSDVAQTRSVLKTLGDRPDHETVDTAKAKLAEIEANLSKQLEENVLSPRPVELDRFQWRAHQAEKEMQCRQLSDKEKQMYKAVIQLDEMHDAYEKLLKEAEERLVKIYQSAERGVEEEDVAPATDEINEEVVGILHDASGNQLERIDISGRRLRILPEAFGQIRGLTVLNVSSNQLEVLPDAIAGLENLEELNASSNLLESLPDSIGLLQKLKLLNVSGNKLTHLPDSICYCRSLVELDVSFNGVTYLPTNIGYELGKLQKLFVQLNKIRTLPTSVCEMRSLCHLDAHFNELRGLPLSIGRLVNLEALNLSSNFSDLKELPETFGDLINLKELDLSNNQIHALPDTFGRLDNLTKLNLEQNPIVIPPLEVVNEGVEAVKVYMAKRWFELLVDEEKKSMLEVQEAGQTGWLTRSSSWLKSYASGVTEYLTSPRAPRDPYLDQQL 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42635482 42637847 + Bma008403.1 Bma12g01054 92480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01054 519 ProSiteProfiles Leucine-rich repeat profile. 264 285 IPR001611 GO:0005515
Bma12g01054 519 ProSiteProfiles Leucine-rich repeat profile. 287 308 IPR001611 GO:0005515
Bma12g01054 519 SMART LRR_bac_2 285 304 - -
Bma12g01054 519 SMART LRR_bac_2 216 235 - -
Bma12g01054 519 SMART LRR_bac_2 378 399 - -
Bma12g01054 519 SMART LRR_bac_2 403 422 - -
Bma12g01054 519 SMART LRR_bac_2 262 281 - -
Bma12g01054 519 SMART LRR_bac_2 332 351 - -
Bma12g01054 519 SMART LRR_bac_2 241 258 - -
Bma12g01054 519 Gene3D Ribonuclease Inhibitor 333 458 IPR032675 -
Bma12g01054 519 Coils Coil 99 119 - -
Bma12g01054 519 Coils Coil 159 186 - -
Bma12g01054 519 SMART LRR_typ_2 309 331 IPR003591 -
Bma12g01054 519 SMART LRR_typ_2 403 426 IPR003591 -
Bma12g01054 519 SMART LRR_typ_2 239 261 IPR003591 -
Bma12g01054 519 SMART LRR_typ_2 378 402 IPR003591 -
Bma12g01054 519 SMART LRR_typ_2 285 308 IPR003591 -
Bma12g01054 519 SMART LRR_typ_2 332 355 IPR003591 -
Bma12g01054 519 SMART LRR_typ_2 262 284 IPR003591 -
Bma12g01054 519 ProSiteProfiles Leucine-rich repeat profile. 405 426 IPR001611 GO:0005515
Bma12g01054 519 PANTHER LEUCINE-RICH REPEAT-CONTAINING 4 509 - -
Bma12g01054 519 SUPERFAMILY L domain-like 215 439 - -
Bma12g01054 519 Pfam Leucine rich repeat 219 275 IPR001611 GO:0005515
Bma12g01054 519 Pfam Leucine rich repeat 397 439 IPR001611 GO:0005515
Bma12g01054 519 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 4 509 - -
Bma12g01054 519 Gene3D Ribonuclease Inhibitor 107 332 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01054 - - - mnt:21385646 728.783
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00083 Bma12g01054 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00954 Bma-Chr7:36083788 Bma12g01054 Bma-Chr12:42635482 4.41E-09 dispersed
Bma11g00068 Bma-Chr11:790946 Bma12g01054 Bma-Chr12:42635482 2.17E-06 dispersed
Bma12g01054 Bma-Chr12:42635482 Bma14g00144 Bma-Chr14:2050539 1.06E-46 dispersed
Bma01g00201 Bma-Chr1:1780671 Bma12g01054 Bma-Chr12:42635482 1.63E-07 transposed
Bma04g00455 Bma-Chr4:3782658 Bma12g01054 Bma-Chr12:42635482 9.05E-08 transposed
Bma05g01318 Bma-Chr5:52697315 Bma12g01054 Bma-Chr12:42635482 1.06E-141 transposed
Bma14g01819 Bma-Chr14:39094571 Bma12g01054 Bma-Chr12:42635482 7.51E-148 transposed
Bma12g01054 Bma-Chr12:42635482 Bma08g00083 Bma-Chr8:978383 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01054 Bma_Chr12 FPKM 2.808032 3.047124 2.815775 2.444389 2.306829 2.209286 4.310326 2.927157 2.960543 3.30913