Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01059 ATGCAATCTGACGAAGAAGAATACGAGTTGAAGCAAGTGAAGGATATGGCTGCTGCCAAAAAGAGATGGGACTCTATGATTAGAGACGGAAAAGTACAAGTTCTTTTGCCGAGAGAAGCAGGGTATGCCATTCAGCTCTCTAACACAACTTTGCTAGATGTTCGTCCCTCAACCGAGCGCACAAAGGCGTGGGTTAAAAGTTCGACCTGGGTGCCCATATTTGATGTTGATAATACGTTTGATGCCGGAGCTATATTTAGAAAAGTCACAAGCTTCATGATGGGAGGTTGGTGGAGTGGTGTGCCCACGTTGTCTTACAATAGTAAGTTCTTACCAGAAGTTGAGGCCAAGTTTCCGAAAGATACCGACCTGATTGTTTCTTGCCAAAAAGGATTAAGATCTCTAGCTGCCTGTGAGCTTCTTTATAATGCTGGCTACAGAAACCTTTTGTGGATTCAAGGGGGATTTGAAGCCGCTGGAGAAGAGGATCTAATCAGAGAAGGTCCTGAGCCGCTTAAATTTGCTGGGATTGGTGGGCTCTCAGAGTTCCTTGGTTGGACTGATCAACAACGAGCTGCAGCTGCGAGGGAAGGTTGGGGATATCGATTAGTGTTCTCTGCCAGACTGCTTGGTGTCTTTCTCGTCGCTGATGCGATGTTTATCGGTGCTCGGCAATTGGGTCAATATATACAGGACTTACGCCCTCACTAA 711 46.27 MQSDEEEYELKQVKDMAAAKKRWDSMIRDGKVQVLLPREAGYAIQLSNTTLLDVRPSTERTKAWVKSSTWVPIFDVDNTFDAGAIFRKVTSFMMGGWWSGVPTLSYNSKFLPEVEAKFPKDTDLIVSCQKGLRSLAACELLYNAGYRNLLWIQGGFEAAGEEDLIREGPEPLKFAGIGGLSEFLGWTDQQRAAAAREGWGYRLVFSARLLGVFLVADAMFIGARQLGQYIQDLRPH 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42706912 42709159 + Bma008408.1 Bma12g01059 92485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01059 236 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 11, CHLOROPLASTIC 1 234 IPR044664 -
Bma12g01059 236 Gene3D - 32 200 IPR036873 -
Bma12g01059 236 Pfam Rhodanese-like domain 48 158 IPR001763 -
Bma12g01059 236 CDD RHOD 44 158 - -
Bma12g01059 236 ProSiteProfiles Rhodanese domain profile. 45 168 IPR001763 -
Bma12g01059 236 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 46 158 IPR036873 -
Bma12g01059 236 SMART rhod_4 35 165 IPR001763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01059 - - - csv:101221836 400.593
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00466 Bma-Chr4:3925716 Bma12g01059 Bma-Chr12:42706912 1.75E-17 dispersed
Bma12g01059 Bma-Chr12:42706912 Bma12g01221 Bma-Chr12:45099402 2.29E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g860 . . Bda06g00622 . . . . Bma12g01059 . . Cma10g00088 . Car10g00078 . . . . Bhi02g00594 . . . . . . Cla06g01706 Cam06g1894 Cec06g1943 Cco06g1947 Clacu06g1850 Cmu06g1791 Cre06g2606 . Cone16ag0063 . . . . . . . . . . . . . . . Cmo10g00089 . . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01599 Csa01g00099 Chy02g02624 Cme02g02022
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00501 . 71 377 Sulfurtransferasese/Rhodanese AT1G79230 78.2 2.0e-146 515.4
Bma03g00501 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 73.2 2.4e-113 405.2
Bma06g01161 . 1 430 Sulfurtransferasese/Rhodanese AT4G01050 52.4 4.6e-121 431.8
Bma04g00466 . 34 229 Sulfurtransferasese/Rhodanese AT2G42220 73.5 3.9e-83 304.7
Bma12g01059 . 1 236 Sulfurtransferasese/Rhodanese AT4G24750 71.2 3.0e-101 365.2
Bma07g00284 . 2 184 Sulfurtransferasese/Rhodanese AT5G19370 64.9 9.7e-63 237.3
Bma13g01072 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 72.2 2.3e-151 531.9
Bma12g01221 . 37 249 Sulfurtransferasese/Rhodanese AT4G27700 68.5 5.7e-76 280.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011200 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01059 Bma_Chr12 FPKM 0.0 1.99065 4.734674 4.387892 5.779884 6.056371 5.772357 3.331052 3.252198 3.159032