Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01061 ATGTTGATTTTCCAAACTCTGTTGATTCTTCTGATTGTTTTCGTCGCGCCAGTTCTGACGTTTTTGTTGACGAAGAAGAAGAAAGATGAAGAGGAGAGCGGCCGGATCGTCCCTTCGGACCCTAAACGGCTGCCCGTCATCGGAAACTTGCACCAGCTCAGACACCCACCTCATGAATCTCTTCACAAACTCTCCAAAGAGTACGGTTCGTTGATGTTTCTACAGCTTGGTTCGATTCCGACAGTCGTAATCTCATCGGCAGACATGGCGAAAGAGGTTTTCAAGAACCATGATCTTGTTTTCTCAAGCAGGCCAGCTCTGTACTCTGCGAAGAGAGTCAGTTATGATTTTTCAAATATTTCGTTTGCTTCTTACAGCGAATATTGGAGAGAGTTGAGGAAGATTGTGACGTTGGAGCTGCTTAGTGCTAAGAGGGTTCAATCTTTTCAAACTGTGAGGGAGGAAGAGGTGGCTCTAATGGCGGATTTTGTCGCTGAATCTTCCAACTGCGTTAATCTGAGCGACTTGTTTCTCTCTCTAGCAAATAACATTATCTGTCGAGTTGCTTTTGGCCAGAAACAGGGTGGAAAAAGTGTTCATGACAAGAACACATTTCACGAGCTTCTCCGAGAATTAGATGATTTCTTAGGAGGATTCAGCATAGCAGATTTCTTCCCGTGGCTGGAGTGGATCAACAATTTCAATGGTTTAGGAGCAAGATATGACAAAAATTTCAGAGAGCTGGACAAGTTCTACGACAGAATTATCGAAGAACACAGTGACCCACGTCAGCCAAATGACGAACACGAGGACATTGTCGACGTTCTTCTTCGGATTCAGAAAGATCCAAATCGATCTATTTCCCTTACTAACAATCAAATCAAGGCCGCCATTAATGATATTTTTGTTGCAGGAACTGATACATCTTCGTCGACACTGACATGGATAATGGCGGAGCTGATTAAGAATCCACCGGCGATGAAAAAAGCACAAGATGAGATCAGAGGGATCATGAAAGGGAAAACGAAGGTGGAAGAGAGAGATCTGACAAAGCTGGAGTACATAAAGCTGGTGATAAAGGAAGGATTCCGTCTCCACCCACCACTGCCATTGTTGGTGCCTCGAGAAACCATAGAGAACTGCAACGTCGACGGCTACCACATTCCGGCCAAAACAAGGGTGTTCGTGAACGCAAAAGCCATCGGAACCGACCCGAAATACTGGGAAAACCCGGAAGAGTTCACGCCGGAGAGATTCTGCGACATCTCGGTTGATTACAGGGGACAGCATCACGAGCTGATTCCGTTCGGGGTCGGTCGGAGGAGCTGTGCGGGAATGAACTTTGCTACCCAGGTGATCGAGCTGGCTCTGGCAACCCTACTGCTCCGTTTCGATTGGCGGCTGCCAGATGGCCAAATCTTGGACATGGACGAATCTTTTGGGCTTATCGTTAACAAGAAGGTCCCCTTATGCCTAGTTGCTAAACTGGTTGCCTAG 1497 46.63 MLIFQTLLILLIVFVAPVLTFLLTKKKKDEEESGRIVPSDPKRLPVIGNLHQLRHPPHESLHKLSKEYGSLMFLQLGSIPTVVISSADMAKEVFKNHDLVFSSRPALYSAKRVSYDFSNISFASYSEYWRELRKIVTLELLSAKRVQSFQTVREEEVALMADFVAESSNCVNLSDLFLSLANNIICRVAFGQKQGGKSVHDKNTFHELLRELDDFLGGFSIADFFPWLEWINNFNGLGARYDKNFRELDKFYDRIIEEHSDPRQPNDEHEDIVDVLLRIQKDPNRSISLTNNQIKAAINDIFVAGTDTSSSTLTWIMAELIKNPPAMKKAQDEIRGIMKGKTKVEERDLTKLEYIKLVIKEGFRLHPPLPLLVPRETIENCNVDGYHIPAKTRVFVNAKAIGTDPKYWENPEEFTPERFCDISVDYRGQHHELIPFGVGRRSCAGMNFATQVIELALATLLLRFDWRLPDGQILDMDESFGLIVNKKVPLCLVAKLVA 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42800238 42801806 + Bma008410.2 Bma12g01061 92487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01061 498 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01061 498 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01061 498 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01061 498 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01061 498 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01061 498 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01061 498 PRINTS E-class P450 group I signature 89 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01061 498 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01061 498 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01061 498 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Bma12g01061 498 PANTHER OS08G0105600 PROTEIN 9 497 - -
Bma12g01061 498 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01061 498 PRINTS P450 superfamily signature 443 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01061 498 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01061 498 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01061 498 Gene3D Cytochrome P450 26 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01061 498 SUPERFAMILY Cytochrome P450 38 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01061 498 Pfam Cytochrome P450 38 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma12g01061 498 PANTHER CYTOCHROME P450 71A9 9 497 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01061 K20617 CYP71A; cytochrome P450 family 71 subfamily A - qsu:111987054 628.632
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00585 Bma-Chr6:31235023 Bma12g01061 Bma-Chr12:42800238 1.41E-134 dispersed
Bma08g00076 Bma-Chr8:951011 Bma12g01061 Bma-Chr12:42800238 1.28E-142 dispersed
Bma12g01061 Bma-Chr12:42800238 Bma09g00984 Bma-Chr9:49367464 3.67E-118 dispersed
Bma12g01058 Bma-Chr12:42675774 Bma12g01061 Bma-Chr12:42800238 2.10E-125 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g861 . . Bda06g00623 Bda15g00532 . . . Bma12g01061 . Cmo18g00175 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0183 . Lsi02g00436 Csa01g00909 Chy12g01217 Cme12g01643 Blo13g00154 Blo15g00245 . . . . . . . . . . . . . . . Bhi08g01683 . . . Hepe07g2179 . . Cla03g00302 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000114 2 12 3 1 0 7 0 7 6 6 11 9 15 7 3 22 9 4 0 10 11 2 0 8 13 10 6 17 8 7 216
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01061 Bma_Chr12 FPKM 0.525735 0.883508 2.845129 3.226009 1.78936 2.86161 2.699096 4.120242 3.779138 4.282812