Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01062 ATGTCTTCTGCTGCCAAAACCATGCTCAAGTCCTTGACAATGGCGGACTCTTGTGGAATTTCTTTCACTTGCATTTGCCCCACCAAAAATGTCTTCCCTTTTCTTCTCAGTTTCCCCTCTAAAATCTCCAGTTTCCACCTTTCGTGTACTCACTCTTCCTTCTTTCTTCCTCCTCTATCTCTCAAAAACAGGTCCTCCAGTTCTCCTTTCGTTACCCTCGTAGCGCAGACCTCAGACTGGGCTCAGGAAAAAGACGATGCCATCACGCCAAACGCGGACGAAGATCTCAAATGGGAAAATGAAGAGCTCGACGATCCAGAATCTAGGGTTTCCGAGTGGGAAGCGGAAGGAGAGAGCGGAGAAGGTGGAGAGACAGAGGTAGAAGAAGAGTCATATTCGGAACCACCAGAAGATGCTAAAATTTTTGTCGGGAACTTGCCATATGATGTTGACAGCGAGAAGTTAGCCATGATTTTTGAGAAAGCAGGGATTGTAGAGATTGCAGAGGTTATTTACAATAGAGAAACTGATAGGAGTCGTGGGTTTGGTTTTGTGACTATGAGTACTGTTGAAGAAGCTGATAAAGCTGTGGATATGTTCAATCGATTTGACGTGGGAGGAAGGCTATTGACTGTCAACAAGGCAGCTCCACGGGGAGAGAGGATCGAACGTCCTCCTCGCACATTCGACCCTTCTTTTAGAATATACGTTGGTAACTTGCCATGGGACGTGGATGGAGCTCGCTTGCAGCAACTTTTCAGCGAACATGGTAATGTGGTGGATGCGCGAGTTGTCTTCGATCGGGAAACTGGACGTTCCCGTGGGTTTGGATTCGTCGTGATGTCTGACGAATCCGGAATGAACGATGCCATTGAGGCTCTTGATGGACAGAGTCTGGGAGGCAGATCTATACGAGTAAGCGTTGCAGAGGAAAAACCGAGGCGATCCTTTTGA 954 47.48 MSSAAKTMLKSLTMADSCGISFTCICPTKNVFPFLLSFPSKISSFHLSCTHSSFFLPPLSLKNRSSSSPFVTLVAQTSDWAQEKDDAITPNADEDLKWENEELDDPESRVSEWEAEGESGEGGETEVEEESYSEPPEDAKIFVGNLPYDVDSEKLAMIFEKAGIVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVDMFNRFDVGGRLLTVNKAAPRGERIERPPRTFDPSFRIYVGNLPWDVDGARLQQLFSEHGNVVDARVVFDRETGRSRGFGFVVMSDESGMNDAIEALDGQSLGGRSIRVSVAEEKPRRSF 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42806983 42808461 + Bma008411.1 Bma12g01062 92488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01062 317 PANTHER RIBONUCLEOPROTEIN 1 316 - -
Bma12g01062 317 Gene3D - 74 222 IPR012677 -
Bma12g01062 317 Gene3D - 223 316 IPR012677 -
Bma12g01062 317 CDD RRM_HP0827_like 234 310 - -
Bma12g01062 317 SMART rrm1_1 234 307 IPR000504 GO:0003723
Bma12g01062 317 SMART rrm1_1 140 213 IPR000504 GO:0003723
Bma12g01062 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Bma12g01062 317 PANTHER OS02G0815200 PROTEIN 1 316 - -
Bma12g01062 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 311 IPR000504 GO:0003723
Bma12g01062 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 305 IPR000504 GO:0003723
Bma12g01062 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 210 IPR000504 GO:0003723
Bma12g01062 317 SUPERFAMILY RNA-binding domain, RBD 225 315 IPR035979 GO:0003676
Bma12g01062 317 SUPERFAMILY RNA-binding domain, RBD 135 227 IPR035979 GO:0003676
Bma12g01062 317 MobiDBLite consensus disorder prediction 100 135 - -
Bma12g01062 317 CDD RRM_HP0827_like 140 217 - -
Bma12g01062 317 MobiDBLite consensus disorder prediction 117 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01062 - - - zju:107418242 378.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02601 Bma-Chr1:83630677 Bma12g01062 Bma-Chr12:42806983 1.46E-15 dispersed
Bma04g00606 Bma-Chr4:5788217 Bma12g01062 Bma-Chr12:42806983 6.81E-17 dispersed
Bma10g00134 Bma-Chr10:1199432 Bma12g01062 Bma-Chr12:42806983 9.36E-42 dispersed
Bma12g01062 Bma-Chr12:42806983 Bma04g00470 Bma-Chr4:3945303 5.26E-22 dispersed
Bma12g01062 Bma-Chr12:42806983 Bma01g01925 Bma-Chr1:71038805 2.90E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01062 Bma_Chr12 FPKM 3.279264 3.761418 10.251807 11.596295 2.612185 2.144721 2.68248 1.253823 1.159071 1.012274