Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01063 ATGATAAAGAAAAGCGTCAATGGAGGAGTAGAGCAGCGGAAACCATACGCTAACGCCACAATTGTAGCTATTCTCATCTCCGCCACCATCAGAGGTGGAGAAAAGAAACCGGCAGGGCCACACTCAGCTCAGGAATCAAAGCAGAGAACTTTCGGTTTCTTGGAGAAAGAGTACGAGCGAGATCACTGCCATCTAGAGAAGTTTACAGAGTTGAATGACACCCGGAAGCAATGGAATATTGATTGCTATAAAGAAGATTATTCAACCACCCAAAATGAAGCAGCAGAACTGGCTGGTGAAGAAAGGTTTGAACGACGGTGGAGATCAACCATCATGCCTCTATCGCAGGAGGAGATTGGAGAGGCGGCGATCAAGCACGCTCTCAAGGCTTTGCGTAAGCGCCACTTCCTCGAAGAAGGCGCTCATGCTCCTGCTTTTCTCGCCCTCTCCAGGCCTATTGCTTTGCTGGGCTTGGAATGGAAGGAGAAAGTGGAGAATTTGGAGATGGAACTGCAACAGTGTAACAAAGCACAATCTCGATTGTCTGAGCAGCTTGTTGTGGAAGTAGCTGAATCCAGAGCTTCTAGAGCTTTAATTACAGAGAAAGACGCAATGATCGATAAACTTCAGAAAGAGTTGACATTAGCAAGGGAAGAATGTTCCGAGTTAAAGACGGACTTAGAAGAGAAATTTAAAGCCTTGGAATTGATTTTGGCTGAGAACAAGGAAATAACGGCGGAACTAGAAGCAATGATAGTGAAGGCTAGAAATGCAGAGGCAGAAAATAAGATGTTGGTTGATCGATGGATGTTGCAAAAGATGCAGGACGCTGAACGTCTTAATGAGGCAAATGCACTTTATGAAGATATGATCGAGCGACTCAAGGCCAGTGGCTTGGAGAAACTTGCTCGACAACAGGTAGATGGTGTAGTTCGTCAAAGTGAAGAGGGTGCTGAGTACTTCGAGTCAGTTGTTCCATCCACATGCAAGTACCGAACACATGCCCATGAAGGAGGGTGTGGTTCCATTTTGTTTGAATATAATTCTGGAAAATTGATCAGCGGAGGACAAGACCGTTTAATTAAAGTCTGGGACACAAACACTGGAGCCTTGAGTAGTACCCTTTACGGCTGCCTTGGTTCTGTACTTGATCTTGCCATTACCCATGACAATAAATCTCTAATTGCAGCTAGCAGCTCAAACAACCTGTACGCATGGGATATCTCCTCTGGACGGGTTCGTCATACTCTAACTGGCCACACTGATAAAGTCTGTACTGTGGCCGTAAGCAAATTCTCCAATCGTCACGTTGTGAGTGCTGCTTATGATCGAACCATTAAAATTTGGGATTTACAGAAAGGTTACTGCACCAACACAATCATTTTCCACAGCAACTGCAATGCAATATGCTTCAGTGTAGATGGGCTAAGTATCTTCTCCGGCCACGTCGATGGAAACCTCCGGTTATGGGATATTCAGACTGGAAAAATGCTCGGAGAAGTCGCAGCTCATTCACTGGCTGTAACTTCTATCTCTCTCTCTAGAAACGGCAATGTAATACTGACAAGTGGGAGAGATAACTTGCACAATTTGTTCGATATGCGATCTCTTGAAGTTTGCGGCACTTTAAGAGCGAGTGGAAACAGAGTTGCCTCTAATTGGAGTAGATCGTGTATGAGTCCAGATGACAACTATGTCGCTGCCGGGTCGGCCGATGGATCTGTTCATATTTGGTCGATATCCAGAGCCGACATTGTAAGTACACTGAAAGAACACGCCTCGTCGGTTTTATGTTGTTCGTGGAGTGGTCTCGGGAAACCTCTTGCGTCGGCCGATAAAAATGGAGTAATATGCACTTGGACTTGA 1866 45.44 MIKKSVNGGVEQRKPYANATIVAILISATIRGGEKKPAGPHSAQESKQRTFGFLEKEYERDHCHLEKFTELNDTRKQWNIDCYKEDYSTTQNEAAELAGEERFERRWRSTIMPLSQEEIGEAAIKHALKALRKRHFLEEGAHAPAFLALSRPIALLGLEWKEKVENLEMELQQCNKAQSRLSEQLVVEVAESRASRALITEKDAMIDKLQKELTLAREECSELKTDLEEKFKALELILAENKEITAELEAMIVKARNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIERLKASGLEKLARQQVDGVVRQSEEGAEYFESVVPSTCKYRTHAHEGGCGSILFEYNSGKLISGGQDRLIKVWDTNTGALSSTLYGCLGSVLDLAITHDNKSLIAASSSNNLYAWDISSGRVRHTLTGHTDKVCTVAVSKFSNRHVVSAAYDRTIKIWDLQKGYCTNTIIFHSNCNAICFSVDGLSIFSGHVDGNLRLWDIQTGKMLGEVAAHSLAVTSISLSRNGNVILTSGRDNLHNLFDMRSLEVCGTLRASGNRVASNWSRSCMSPDDNYVAAGSADGSVHIWSISRADIVSTLKEHASSVLCCSWSGLGKPLASADKNGVICTWT 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42811460 42816681 + Bma030530 Bma12g01063 92489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01063 621 Pfam WD domain, G-beta repeat 456 491 IPR001680 GO:0005515
Bma12g01063 621 Pfam WD domain, G-beta repeat 413 450 IPR001680 GO:0005515
Bma12g01063 621 Pfam WD domain, G-beta repeat 558 579 IPR001680 GO:0005515
Bma12g01063 621 Pfam WD domain, G-beta repeat 334 365 IPR001680 GO:0005515
Bma12g01063 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 468 500 IPR001680 GO:0005515
Bma12g01063 621 Coils Coil 241 268 - -
Bma12g01063 621 Coils Coil 80 100 - -
Bma12g01063 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 536 IPR001680 GO:0005515
Bma12g01063 621 PANTHER AUTOPHAGY PROTEIN 16-LIKE 116 621 IPR045160 GO:0000045
Bma12g01063 621 Gene3D - 322 463 IPR015943 GO:0005515
Bma12g01063 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 375 416 IPR001680 GO:0005515
Bma12g01063 621 ProSitePatterns Trp-Asp (WD) repeats signature. 352 366 IPR019775 -
Bma12g01063 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 417 459 IPR001680 GO:0005515
Bma12g01063 621 PRINTS G protein beta WD-40 repeat signature 437 451 IPR020472 -
Bma12g01063 621 PRINTS G protein beta WD-40 repeat signature 352 366 IPR020472 -
Bma12g01063 621 PRINTS G protein beta WD-40 repeat signature 478 492 IPR020472 -
Bma12g01063 621 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 116 621 - -
Bma12g01063 621 Coils Coil 157 184 - -
Bma12g01063 621 Pfam Autophagy protein 16 (ATG16) 161 281 IPR013923 -
Bma12g01063 621 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 333 369 - -
Bma12g01063 621 Gene3D - 200 270 - -
Bma12g01063 621 SUPERFAMILY WD40 repeat-like 324 620 IPR036322 GO:0005515
Bma12g01063 621 ProSitePatterns Trp-Asp (WD) repeats signature. 478 492 IPR019775 -
Bma12g01063 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 560 588 IPR001680 GO:0005515
Bma12g01063 621 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 589 621 - -
Bma12g01063 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 374 IPR001680 GO:0005515
Bma12g01063 621 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 417 454 - -
Bma12g01063 621 Gene3D - 464 621 IPR015943 GO:0005515
Bma12g01063 621 Coils Coil 199 226 - -
Bma12g01063 621 ProSitePatterns Trp-Asp (WD) repeats signature. 437 451 IPR019775 -
Bma12g01063 621 Coils Coil 277 297 - -
Bma12g01063 621 SMART WD40_4 410 450 IPR001680 GO:0005515
Bma12g01063 621 SMART WD40_4 368 407 IPR001680 GO:0005515
Bma12g01063 621 SMART WD40_4 453 491 IPR001680 GO:0005515
Bma12g01063 621 SMART WD40_4 494 533 IPR001680 GO:0005515
Bma12g01063 621 SMART WD40_4 536 579 IPR001680 GO:0005515
Bma12g01063 621 SMART WD40_4 582 621 IPR001680 GO:0005515
Bma12g01063 621 SMART WD40_4 326 365 IPR001680 GO:0005515
Bma12g01063 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 589 621 IPR001680 GO:0005515
Bma12g01063 621 CDD WD40 336 620 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01063 K17890 ATG16L1; autophagy-related protein 16-1 - cit:102610991 841.262
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01063 Bma-Chr12:42811460 Bma13g00214 Bma-Chr13:3102812 4.78E-28 dispersed
Bma01g00635 Bma-Chr1:5738755 Bma12g01063 Bma-Chr12:42811460 8.10E-10 transposed
Bma01g00965 Bma-Chr1:9515353 Bma12g01063 Bma-Chr12:42811460 3.97E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g873 . . Bda06g00626 . . . . Bma12g01063 . . . . . . Sed08g0061 . Cpe04g01594 Bhi02g00574 Tan09g2330 Cmetu06g0240 . Hepe09g0081 . . Cla06g01715 Cam06g1904 Cec06g1954 Cco06g1958 Clacu06g1860 Cmu06g1802 Cre06g2617 Cone2ag0942 Cone16ag0059 . . . . . . . Blo15g00241 . . Bpe07g00867 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01609 Csa01g00087 Chy02g02633 Cme02g02032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009836 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01063 Bma_Chr12 FPKM 2.856179 2.72999 5.286116 5.119655 5.004237 5.245137 5.78312 4.012304 4.383725 4.902013