Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01074 ATGGCCCCAACTGTTCCTATAGAGTTCACTGGCCAGAAGGAATCAAGAAAGTACTCTCTTTCGCAGACAATGGGTAAATCTAGGAAATATTCCAAAGGGCTATCATCTGGTTTTGTCTCAGATTCCCGTCATGTTGTAGAGACTATTGATGAATCAGATGGTTTTGGAAGTTCAGCGCAGGTTGAAGATGAGGCAATTGCTATAGAAAATTCACGTGCTCCTAAAAGGAAGTGTATTAGTTTGAATGGTTGTGATAACTTTGGCGTTGGTTTACAAGTTTTGTCTGTGTCAAAAATGACACCTTCTGAAAGGAAGGATTTGGAATTGAAGTTGAAGATGGAACTTGAGCAGGTTCGGGCAATCCAAAAGAAAATTTCTAGTGTTGGCGCTTTGTCCACATCAAGTTATACTCAGAGCTATAACGTTGGACAGAGAGGAGCCTCTTTTGAGAATTTCAATAGGCCGCCCCAAGTCTCGGCTTCTAAGGGTAAGAAACGTCCAAATGGTACTCAAGCCAAGAAAAACAATTTTGGACCAGCCAAACCTGCAGCAGCAGTGAGTACGTCAAATGCTGCATTAGTCAAGCAGTGTGAAACACTATTGAATCGTTTAATGTCTCATCAGTATGCTTGGATTTTTAACTCCCCAGTCGACGCTGTGAAGTTGAACATTCCTGATTATTTCACTGTCATAAAGCATCCAATGGACTTGGGAACAGTGAAGAGCAACATGGTTATGGACAAATATAGAGATTTAATGGATTTCGCTGCAGATGTGAGGCTTACGTTTTCAAATGCAATGACGTACAATCCTCCAGAAAATGATGTTCATTTCATGGCAAGTTCACTTAGTAAATATTTTGAAGTGAGATGGAAAGGTATAGAGAAGAAGCTTCCATTACCCATTAACGTGCCTTCAAGAGTTCAAATGGACACTGAAGCTTCTTTAAGTGTACCACTTTCAACTAATGAGCAAATTACTACAGATGACTTTTATGGTCAATCGGATATTAATAGGAAACCAATGACTGATGAAGAAAAGCACAAGCTTAGTTTGGAGTTGGAGTCTTTATCCACAGACTTGCCTCAAAGCATAATTACATTCCTGAAGGAGCACAGCTCTAGTTCAGGTCAAAACAGCGAGGATGAGATTGAAATTGACATTTATGTACTCAGTGATGATACGTTGTTCACTCTGAGGAAGCTTTTGGATGATTGTTTATTAAAGCAAACAACCCAAGTGAAGGCTGAATCTTTTGATTTGGAGCGTCAGAATGAATCAGGGATTCACAATTCATCCATAGATGCATGTAAAGGAAATGACCCAATTGACGAAGATGTGGATATTGTTGGTGGAAATGATCAACCAGTGTCTACCTATCTTCCATCAGAAACAGATAATGATGTTGTTTGTCTTCGTACCAAAGGCGATAGCTCATGCACTTCAAGTGGGGGGTCTTCATCAAGTGATTCTGGCTCAGGCGGTTCATCTGAAAGTGAATCTGAAGATGCCAATGCCGTAGGTCCTAGCAGCATCACAAAGGAAATCATTGGTGACAAAACTATTTCCGATAATCAAAGAGTTCAGTTTGGTGATTCAGAAAATCCCACTTATTCAGAAAATGAGGTTGGTATAATTGAGCCCAATTTTCAGCCAGGATCAGTTTTTTTAAAGACAGATACTCAACAAGAGGTGGATAGCGCTCCATCTGAGAGGCAAGTCTCGCCTGAAAAACTATACCGTGCAGCACTATTGAGGAATCGTTTTGCTGATACCATACTTAAGGCTCGAGAAAAAGCATTTGAAAAGGGTGACAAACTCGACCCAGAAAAACTTCGAATAGAGAGAGACGAACTTGAAAGGCGGCAAAAAGAAGAAAAGGCTAGACTCCAGGCGGAAGCGAAGGCTGCAGAAGAGGCAAGAAAAAAAGCTGCTCGAGAAGCTGCGGCTGAAGCAAAAAGGAAGAGGGAGCTAGAGAGAGAAGCTGCACGTCAGGCATTGTTAAAGATGGAAAAGACTGTTGAAATCAATGGGAATAGTCTGTTTATGGAAGATCTGGAACTCCTCAGGGTTTCCCACGAGGAAGATTTACCAACTTCTGGAGAGCTGACCAGCCCAGATCATTTATCGAGTGGGTTGGGTAGTTTTAAGCTACAAGGGAGCAGTAACCCCTTGGAACAGCTCGGCTTGTACATGAAAAAGGAGGATGGTGATTTTGACGATGACGAAGTGGAAGAAGGACCCCAAGGTTCTGAACCGTTAAATGATGTCGAGGAAGGCGAAATTGATTAA 2292 41.58 MAPTVPIEFTGQKESRKYSLSQTMGKSRKYSKGLSSGFVSDSRHVVETIDESDGFGSSAQVEDEAIAIENSRAPKRKCISLNGCDNFGVGLQVLSVSKMTPSERKDLELKLKMELEQVRAIQKKISSVGALSTSSYTQSYNVGQRGASFENFNRPPQVSASKGKKRPNGTQAKKNNFGPAKPAAAVSTSNAALVKQCETLLNRLMSHQYAWIFNSPVDAVKLNIPDYFTVIKHPMDLGTVKSNMVMDKYRDLMDFAADVRLTFSNAMTYNPPENDVHFMASSLSKYFEVRWKGIEKKLPLPINVPSRVQMDTEASLSVPLSTNEQITTDDFYGQSDINRKPMTDEEKHKLSLELESLSTDLPQSIITFLKEHSSSSGQNSEDEIEIDIYVLSDDTLFTLRKLLDDCLLKQTTQVKAESFDLERQNESGIHNSSIDACKGNDPIDEDVDIVGGNDQPVSTYLPSETDNDVVCLRTKGDSSCTSSGGSSSSDSGSGGSSESESEDANAVGPSSITKEIIGDKTISDNQRVQFGDSENPTYSENEVGIIEPNFQPGSVFLKTDTQQEVDSAPSERQVSPEKLYRAALLRNRFADTILKAREKAFEKGDKLDPEKLRIERDELERRQKEEKARLQAEAKAAEEARKKAAREAAAEAKRKRELEREAARQALLKMEKTVEINGNSLFMEDLELLRVSHEEDLPTSGELTSPDHLSSGLGSFKLQGSSNPLEQLGLYMKKEDGDFDDDEVEEGPQGSEPLNDVEEGEID 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43025800 43030003 - Bma008421.2 Bma12g01074 92500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01074 763 Gene3D - 174 299 IPR036427 GO:0005515
Bma12g01074 763 ProSiteProfiles NET domain profile. 332 414 IPR027353 -
Bma12g01074 763 MobiDBLite consensus disorder prediction 147 182 - -
Bma12g01074 763 ProSiteProfiles Bromodomain profile. 205 277 IPR001487 GO:0005515
Bma12g01074 763 CDD Bromo_plant1 195 291 IPR037377 -
Bma12g01074 763 Pfam Bromodomain extra-terminal - transcription regulation 341 404 IPR027353 -
Bma12g01074 763 MobiDBLite consensus disorder prediction 476 508 - -
Bma12g01074 763 MobiDBLite consensus disorder prediction 476 540 - -
Bma12g01074 763 MobiDBLite consensus disorder prediction 147 175 - -
Bma12g01074 763 Gene3D - 335 412 IPR038336 -
Bma12g01074 763 PANTHER TRANSCRIPTION FACTOR GTE8 25 744 - -
Bma12g01074 763 SMART bromo_6 186 296 IPR001487 GO:0005515
Bma12g01074 763 MobiDBLite consensus disorder prediction 616 659 - -
Bma12g01074 763 MobiDBLite consensus disorder prediction 703 726 - -
Bma12g01074 763 PRINTS Bromodomain signature 208 221 IPR001487 GO:0005515
Bma12g01074 763 PRINTS Bromodomain signature 258 277 IPR001487 GO:0005515
Bma12g01074 763 PRINTS Bromodomain signature 224 240 IPR001487 GO:0005515
Bma12g01074 763 PRINTS Bromodomain signature 240 258 IPR001487 GO:0005515
Bma12g01074 763 MobiDBLite consensus disorder prediction 1 24 - -
Bma12g01074 763 Coils Coil 616 662 - -
Bma12g01074 763 MobiDBLite consensus disorder prediction 693 763 - -
Bma12g01074 763 Coils Coil 104 124 - -
Bma12g01074 763 SUPERFAMILY Bromodomain 188 300 IPR036427 GO:0005515
Bma12g01074 763 PANTHER TRANSCRIPTION FACTOR GTE10 25 744 - -
Bma12g01074 763 Pfam Bromodomain 197 280 IPR001487 GO:0005515
Bma12g01074 763 MobiDBLite consensus disorder prediction 516 540 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01074 - - - cit:102625809 720.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00643 Bma-Chr9:43863337 Bma12g01074 Bma-Chr12:43025800 0 dispersed
Bma10g00553 Bma-Chr10:6691174 Bma12g01074 Bma-Chr12:43025800 1.52E-12 dispersed
Bma12g00714 Bma-Chr12:32073745 Bma12g01074 Bma-Chr12:43025800 9.85E-40 dispersed
Bma12g01074 Bma-Chr12:43025800 Bma14g01387 Bma-Chr14:26034549 0 dispersed
Bma12g01074 Bma-Chr12:43025800 Bma02g01398 Bma-Chr2:56232808 2.05E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01074 Bma_Chr12 FPKM 2.014742 2.745439 1.661212 1.757998 5.133819 5.398536 4.87951 1.320637 0.886948 1.252033