Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01079 ATGGCTGCCACGACCACCGGAGTTTGCCGTAGTGGGGAGGACCGGGTCATGGCCGCAGCTCAGCAAATCGTTAAAAGCCTCAATACTCCTAAAGAGGTTCGCGAGGATATGCTCTTGATCTTCTCCAACTTTGACGATCGGCTCTCCAAGATCTCCGATGTTGTTCACGGTGAGGATTTTAGAACTGACAATGACCGATTTGAAGCTGCCGAGAAGGCGATTCGTCGTTGGGACTCCGACTCCATTTCTGTGCCTCGTGCTTCTAGAGATTGGGAGGAATCATCGGGTGAGTTCTTGTCGACGGTGGATGAGATCCTAGACCTGATCGAGAACCGTTCAATTCGGTGCGATTCTAAGATCATGGATCGAGCGGAGAAATCAATCCAGCTTGCGATGTCTCGGCTAGAGGATGAATTCCGTCACATTCTGATTCGAAACACGGTCTCTCTCGACGCCGAAGGACTCTACGGTTTGATGCATAAGGCCTCAGCTCCGTTCGTCTCCGTTGGTGGCGAAATTTACTCTAAATTCGAAAGTTTTGCCCAGGTGGATCGCGGATCGGATCGTTTCGACGATGTGTGCATTGACCTGATCCATCCCAATGCGATCGTCGAGCTCCAAGAGATTGCCGACAGGATGATTCGAGCTGGTTACGACAAAGAATGTCTTCGCGCCTACAGCACCGTCCGAGGCGACGCTTTGGACGACTGTTTGGCAATTCTCGGCGTCGAAAGGCTCAGCATCGAGGAGGTTCAGAAAAGCGACTGGACTGTAATGGATGAGAAGATGAAGAACTGGATTCAAGCAGTTAAAATCATGGTTCGCGTGCTTCTGTTGGGGGAAAAGAGGGTCTGCGAACAGATTTTCAGTTCGTCGAATCAGTCGCGGGAGATTTGCTTCAACGAGTCTGCAAGAGCATGCGTGACGCCGCTGATGAATTTCGGAGAGACGGTGGCGATCGGAAAACGGTCACCGGAGAAGCTATTCCGGATATTGGATATGTACGAAGCATGGAAAGAGGTTTTATCAGACTCACTGACCATGGCTACGGATCCAAAACTCATCGATGGGGCAGAAGCTGTGTTGACCGAACTGGGAAAAGCAGTAAAATGGACATTTTCAGAGTTTGAGAACGCCGTTCGGAAGGAAACTTCCAAGAAAGCGACGATAAACGCAGAAATCCACCCACTTTCCCGGTACGTGATGAATTATCTAACGCTACTCGTCGACTACAGAGACACCCTCGACTCGCTTTTAGAGATCGAGGAAGACGATTTTCTTGACTTGCAGACTGAAAATGGCGGCAATACACAACTGGAAAACAAGTCTCCGACAGCTCTGAAAGTGGTCTTGTTGATATCCTCTTTAGAATCCAACCTCGAAAAAAAATCGAAACTTTACGACGATGGATCAATGCAAGATGTATTTCTTATGAACAACATTCTTTATATAGTTCAGAAGCTAAAAGATTCAGATCTGGGCAAACTTCTGGGCAACGACTGGATTCGAAACAGGCAACGCCAGATCCGCCAGCACGCAACGAGTTATCTCAGAACCTGCTGGAGCAAAGTGCTGGCCCATTTGAAGGATGTCAGCACCTGTGGAAGCTCGAACACCGCCTCGAAAATGGCGCTAAAGGAGAAGTTCAAGAATTTCAACTCGGGCTTCGAAGAAATCTACAGAACTCAGACGGCGTGGAAGGTCTCGGATGCTCAGCTCCGAGAAGAGCTCAGAATATCCATATCGGAAAAAGTACTTCCGGCCTATCGGTCCTTCGTCGGACGGTTTAGAAATCAGCTAGAGAGTGGGAGAAATAGTGGCAAGTACATAAAGTATTCGCCGGAGGATCTAGAGAACTATTTATTGGATCTGTTTGAAGGATCGCCTGCTGTTCTTCATCACATGCGAAGAAAAAGTACATAA 1923 48.41 MAATTTGVCRSGEDRVMAAAQQIVKSLNTPKEVREDMLLIFSNFDDRLSKISDVVHGEDFRTDNDRFEAAEKAIRRWDSDSISVPRASRDWEESSGEFLSTVDEILDLIENRSIRCDSKIMDRAEKSIQLAMSRLEDEFRHILIRNTVSLDAEGLYGLMHKASAPFVSVGGEIYSKFESFAQVDRGSDRFDDVCIDLIHPNAIVELQEIADRMIRAGYDKECLRAYSTVRGDALDDCLAILGVERLSIEEVQKSDWTVMDEKMKNWIQAVKIMVRVLLLGEKRVCEQIFSSSNQSREICFNESARACVTPLMNFGETVAIGKRSPEKLFRILDMYEAWKEVLSDSLTMATDPKLIDGAEAVLTELGKAVKWTFSEFENAVRKETSKKATINAEIHPLSRYVMNYLTLLVDYRDTLDSLLEIEEDDFLDLQTENGGNTQLENKSPTALKVVLLISSLESNLEKKSKLYDDGSMQDVFLMNNILYIVQKLKDSDLGKLLGNDWIRNRQRQIRQHATSYLRTCWSKVLAHLKDVSTCGSSNTASKMALKEKFKNFNSGFEEIYRTQTAWKVSDAQLREELRISISEKVLPAYRSFVGRFRNQLESGRNSGKYIKYSPEDLENYLLDLFEGSPAVLHHMRRKST 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43094469 43096391 + Bma008426.1 Bma12g01079 92505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01079 640 PANTHER EXOCYST COMPLEX PROTEIN EXO70 48 639 IPR004140 GO:0000145|GO:0006887
Bma12g01079 640 Pfam Exo70 exocyst complex subunit 264 622 IPR046364 GO:0000145|GO:0005546|GO:0006887
Bma12g01079 640 Gene3D Exocyst complex component Exo70 74 633 - -
Bma12g01079 640 SUPERFAMILY Cullin repeat-like 65 626 IPR016159 -
Bma12g01079 640 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 48 639 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01079 K07195 EXOC7, EXO70; exocyst complex component 7 - zju:107418032 782.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00255 Bma-Chr6:3501444 Bma12g01079 Bma-Chr12:43094469 5.68E-42 dispersed
Bma06g00256 Bma-Chr6:3506836 Bma12g01079 Bma-Chr12:43094469 0 dispersed
Bma08g00906 Bma-Chr8:47947222 Bma12g01079 Bma-Chr12:43094469 2.77E-116 dispersed
Bma09g00990 Bma-Chr9:49401086 Bma12g01079 Bma-Chr12:43094469 8.07E-122 dispersed
Bma12g01079 Bma-Chr12:43094469 Bma15g00313 Bma-Chr15:3022118 5.88E-125 dispersed
Bma12g01079 Bma-Chr12:43094469 Bma03g01256 Bma-Chr3:21081145 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00906 . 10 648 EXO70 exocyst subunit family AT5G03540 75.9 2.4e-279 958.0
Bma01g02005 . 3 641 EXO70 exocyst subunit family AT5G03540 71.4 4.8e-264 907.1
Bma01g02005 . 3 641 EXO70 exocyst subunit family AT5G52340 78.5 1.3e-290 995.3
Bma08g00906 . 12 648 EXO70 exocyst subunit family AT5G52340 73.3 8.7e-271 929.5
Bma01g02005 . 147 634 EXO70 exocyst subunit family AT5G52350 62.4 6.8e-169 590.9
Bma08g00906 . 147 650 EXO70 exocyst subunit family AT5G52350 58.3 1.2e-160 563.5
Bma15g00313 BCT 7 607 EXO70 exocyst subunit family AT1G72470 63.6 8.8e-215 743.4
Bma09g00990 BCT 8 608 EXO70 exocyst subunit family AT1G72470 60.3 6.8e-199 690.6
Bma15g00313 BCT 1 605 EXO70 exocyst subunit family AT1G54090 62.0 1.1e-212 736.5
Bma09g00990 BCT 9 606 EXO70 exocyst subunit family AT1G54090 58.2 1.3e-197 686.4
Bma15g00313 BCT 3 606 EXO70 exocyst subunit family AT3G14090 63.8 4.8e-221 764.2
Bma09g00990 BCT 2 607 EXO70 exocyst subunit family AT3G14090 59.4 5.8e-203 704.1
Bma03g01256 CCT 13 650 EXO70 exocyst subunit family AT5G50380 61.4 3.1e-221 765.0
Bma06g00256 CCT 13 648 EXO70 exocyst subunit family AT5G50380 59.1 2.0e-217 752.3
Bma12g01079 . 13 639 EXO70 exocyst subunit family AT5G50380 56.9 2.7e-201 698.7
Bma04g00034 BCT 15 683 EXO70 exocyst subunit family AT4G31540 70.0 8.5e-280 959.5
Bma01g02121 BCT 6 674 EXO70 exocyst subunit family AT4G31540 67.7 2.9e-272 934.5
Bma01g02125 CCT 10 305 EXO70 exocyst subunit family AT4G31540 58.4 1.1e-106 384.4
Bma03g00313 . 42 630 EXO70 exocyst subunit family AT3G55150 51.2 1.6e-160 563.1
Bma14g00483 CCT 1 570 EXO70 exocyst subunit family AT3G55150 50.3 1.5e-153 540.0
Bma04g01661 . 1 199 EXO70 exocyst subunit family AT3G55150 55.1 5.1e-53 206.1
Bma03g00313 . 42 630 EXO70 exocyst subunit family AT2G39380 51.8 2.1e-163 572.8
Bma04g01661 . 1 200 EXO70 exocyst subunit family AT2G39380 54.6 5.8e-57 219.2
Bma04g01661 . 1 200 EXO70 exocyst subunit family AT3G09530 58.5 8.4e-56 215.3
Bma04g01661 . 1 201 EXO70 exocyst subunit family AT3G09520 62.9 7.0e-63 238.8
Bma11g00137 BCT,CCT 11 608 EXO70 exocyst subunit family AT5G59730 53.3 9.5e-169 590.5
Bma07g00116 BCT,CCT 4 578 EXO70 exocyst subunit family AT5G59730 50.1 1.1e-151 533.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01079 Bma_Chr12 FPKM 33.099373 35.370201 21.406668 21.883621 18.950373 17.558674 17.937391 35.665829 38.081554 39.041759