Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01079 ATGGCTGCCACGACCACCGGAGTTTGCCGTAGTGGGGAGGACCGGGTCATGGCCGCAGCTCAGCAAATCGTTAAAAGCCTCAATACTCCTAAAGAGGTTCGCGAGGATATGCTCTTGATCTTCTCCAACTTTGACGATCGGCTCTCCAAGATCTCCGATGTTGTTCACGGTGAGGATTTTAGAACTGACAATGACCGATTTGAAGCTGCCGAGAAGGCGATTCGTCGTTGGGACTCCGACTCCATTTCTGTGCCTCGTGCTTCTAGAGATTGGGAGGAATCATCGGGTGAGTTCTTGTCGACGGTGGATGAGATCCTAGACCTGATCGAGAACCGTTCAATTCGGTGCGATTCTAAGATCATGGATCGAGCGGAGAAATCAATCCAGCTTGCGATGTCTCGGCTAGAGGATGAATTCCGTCACATTCTGATTCGAAACACGGTCTCTCTCGACGCCGAAGGACTCTACGGTTTGATGCATAAGGCCTCAGCTCCGTTCGTCTCCGTTGGTGGCGAAATTTACTCTAAATTCGAAAGTTTTGCCCAGGTGGATCGCGGATCGGATCGTTTCGACGATGTGTGCATTGACCTGATCCATCCCAATGCGATCGTCGAGCTCCAAGAGATTGCCGACAGGATGATTCGAGCTGGTTACGACAAAGAATGTCTTCGCGCCTACAGCACCGTCCGAGGCGACGCTTTGGACGACTGTTTGGCAATTCTCGGCGTCGAAAGGCTCAGCATCGAGGAGGTTCAGAAAAGCGACTGGACTGTAATGGATGAGAAGATGAAGAACTGGATTCAAGCAGTTAAAATCATGGTTCGCGTGCTTCTGTTGGGGGAAAAGAGGGTCTGCGAACAGATTTTCAGTTCGTCGAATCAGTCGCGGGAGATTTGCTTCAACGAGTCTGCAAGAGCATGCGTGACGCCGCTGATGAATTTCGGAGAGACGGTGGCGATCGGAAAACGGTCACCGGAGAAGCTATTCCGGATATTGGATATGTACGAAGCATGGAAAGAGGTTTTATCAGACTCACTGACCATGGCTACGGATCCAAAACTCATCGATGGGGCAGAAGCTGTGTTGACCGAACTGGGAAAAGCAGTAAAATGGACATTTTCAGAGTTTGAGAACGCCGTTCGGAAGGAAACTTCCAAGAAAGCGACGATAAACGCAGAAATCCACCCACTTTCCCGGTACGTGATGAATTATCTAACGCTACTCGTCGACTACAGAGACACCCTCGACTCGCTTTTAGAGATCGAGGAAGACGATTTTCTTGACTTGCAGACTGAAAATGGCGGCAATACACAACTGGAAAACAAGTCTCCGACAGCTCTGAAAGTGGTCTTGTTGATATCCTCTTTAGAATCCAACCTCGAAAAAAAATCGAAACTTTACGACGATGGATCAATGCAAGATGTATTTCTTATGAACAACATTCTTTATATAGTTCAGAAGCTAAAAGATTCAGATCTGGGCAAACTTCTGGGCAACGACTGGATTCGAAACAGGCAACGCCAGATCCGCCAGCACGCAACGAGTTATCTCAGAACCTGCTGGAGCAAAGTGCTGGCCCATTTGAAGGATGTCAGCACCTGTGGAAGCTCGAACACCGCCTCGAAAATGGCGCTAAAGGAGAAGTTCAAGAATTTCAACTCGGGCTTCGAAGAAATCTACAGAACTCAGACGGCGTGGAAGGTCTCGGATGCTCAGCTCCGAGAAGAGCTCAGAATATCCATATCGGAAAAAGTACTTCCGGCCTATCGGTCCTTCGTCGGACGGTTTAGAAATCAGCTAGAGAGTGGGAGAAATAGTGGCAAGTACATAAAGTATTCGCCGGAGGATCTAGAGAACTATTTATTGGATCTGTTTGAAGGATCGCCTGCTGTTCTTCATCACATGCGAAGAAAAAGTACATAA 1923 48.41 MAATTTGVCRSGEDRVMAAAQQIVKSLNTPKEVREDMLLIFSNFDDRLSKISDVVHGEDFRTDNDRFEAAEKAIRRWDSDSISVPRASRDWEESSGEFLSTVDEILDLIENRSIRCDSKIMDRAEKSIQLAMSRLEDEFRHILIRNTVSLDAEGLYGLMHKASAPFVSVGGEIYSKFESFAQVDRGSDRFDDVCIDLIHPNAIVELQEIADRMIRAGYDKECLRAYSTVRGDALDDCLAILGVERLSIEEVQKSDWTVMDEKMKNWIQAVKIMVRVLLLGEKRVCEQIFSSSNQSREICFNESARACVTPLMNFGETVAIGKRSPEKLFRILDMYEAWKEVLSDSLTMATDPKLIDGAEAVLTELGKAVKWTFSEFENAVRKETSKKATINAEIHPLSRYVMNYLTLLVDYRDTLDSLLEIEEDDFLDLQTENGGNTQLENKSPTALKVVLLISSLESNLEKKSKLYDDGSMQDVFLMNNILYIVQKLKDSDLGKLLGNDWIRNRQRQIRQHATSYLRTCWSKVLAHLKDVSTCGSSNTASKMALKEKFKNFNSGFEEIYRTQTAWKVSDAQLREELRISISEKVLPAYRSFVGRFRNQLESGRNSGKYIKYSPEDLENYLLDLFEGSPAVLHHMRRKST 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43094469 43096391 + Bma008426.1 Bma12g01079 92505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01079 640 PANTHER EXOCYST COMPLEX PROTEIN EXO70 48 639 IPR004140 GO:0000145|GO:0006887
Bma12g01079 640 Pfam Exo70 exocyst complex subunit 264 622 IPR046364 GO:0000145|GO:0005546|GO:0006887
Bma12g01079 640 Gene3D Exocyst complex component Exo70 74 633 - -
Bma12g01079 640 SUPERFAMILY Cullin repeat-like 65 626 IPR016159 -
Bma12g01079 640 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 48 639 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00255 Bma-Chr6:3501444 Bma12g01079 Bma-Chr12:43094469 5.68E-42 dispersed
Bma06g00256 Bma-Chr6:3506836 Bma12g01079 Bma-Chr12:43094469 0 dispersed
Bma08g00906 Bma-Chr8:47947222 Bma12g01079 Bma-Chr12:43094469 2.77E-116 dispersed
Bma09g00990 Bma-Chr9:49401086 Bma12g01079 Bma-Chr12:43094469 8.07E-122 dispersed
Bma12g01079 Bma-Chr12:43094469 Bma15g00313 Bma-Chr15:3022118 5.88E-125 dispersed
Bma12g01079 Bma-Chr12:43094469 Bma03g01256 Bma-Chr3:21081145 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01079 K07195 - zju:107418032 782.326