Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01080 ATGCCTGTTAACCGTCAAACCCCTCTTGTTTCTCACCCTCAACCTCAAACTCAAGGTGGATCTCACTTTACAGGTCACTTTCAGTTATCTGAGCCTCAAGCCCATGCACTAACCCAGTCTCAGTATACACATGCTAAAGCACAGGCACCGGTTCAAGCCCCACACAGCCAATTTCAGTCTCAGTTGCAAACTCAAGCTCATTCTCTTGCCCAGCTCCATAGTGCTAATACTACTAGTTTTGGGGGTCAACCTTCAGTTTCAACACCTGGCACAGGAAGTGCAAAGCGGGTTTCTCAGAAGCCACCCTCTCGGCCTACAGGATCATCTAATACTAACTCAACTTTACCTTTTAAAACGATGGAGCTAACCCCAGCTGCTCGTAGAAAGAAGCAGAAGCACTCTGACAAGGACATACCTGAGAAAGTAGCTGCTCTTCTGCCGGAGTCAGCTATTTATACTCAGTTGCTTCAGTTTGAAACAAGAGTCGATGATGCTTTGGCAAGAAAGAAGATTGACATTCGAGAGTCCCTTAAAAATCCCATCTGTGACCAGAAAACACTTCGAATTTATGTCTTCAATACATTTGTGAATCAAATTCAAGCCAGTCCAGACGAGACCTCAGAATCCTCTTCTTGGTCACTTAAGATAATTGGAAGGTTACTGGAAGATGGAAGAGATCCCGTGATTGATGAACCATTGCAGAAATCCAACTCATACCCAAAATTTTCGTCTTTCTTCAAAAACATTACTATATACTTGGACCAGAGCCTTTATCCAGATAATCATGTCATTCAATGGGTGTCTGCTCGTTCACCCGTACTTCATGAAGGCTTTGAGGTGAAGAGAAAAGGAGATAAGGAATTCTCTGCAGTTATTAGACTGGAAATGAATTATGTTCCTGAAAAATTTAAGCTTTCACAGGCACTATCTGAGGTTCTTGGGATTGAGATGGACACCCGCCCAAGAATTCTAGCTTCAATTTGGCACTATGTGAAGGTCAAAAGGTTGCAGAATTCAAATGACCCGTCTTGCTTTACATGTGATTCAGCTCTTCAGAAAGTATTTGGGGAGGAGAAGATGAAATTCTCAATGGTTTCGAACAAGCTATCACAGCATTTGACTACACCACGACCTATACATATAGAGCATAAAATTAAGCTTTCTGGAACTTGCCCTGTTGGAACTACTTGCTATGATGTACTGGTTGATGTGCCCATCCCTGTGGGCAAGGACATGTCCACATTCTTAGCAAACACTGACATGAACGAAGAAATTGAAGCCTGTGATGAATTGATACGTGGTGCAATAAAAAAGTTACACAAGCATAATCGAAGGCGCTCTTTCTTCGTTGGATTCAGTCAATCTCCAGCCGAGTTTATCAATACTTTGATTGCTTCTCAGAGCAAGGATCTAAAGCTTGCTGCTGGTGATATAAAACAAATTGCAGAAAAAGAACGCTTCTCCAATTTCTACAATCAGTCGTGGTAA 1488 42.27 MPVNRQTPLVSHPQPQTQGGSHFTGHFQLSEPQAHALTQSQYTHAKAQAPVQAPHSQFQSQLQTQAHSLAQLHSANTTSFGGQPSVSTPGTGSAKRVSQKPPSRPTGSSNTNSTLPFKTMELTPAARRKKQKHSDKDIPEKVAALLPESAIYTQLLQFETRVDDALARKKIDIRESLKNPICDQKTLRIYVFNTFVNQIQASPDETSESSSWSLKIIGRLLEDGRDPVIDEPLQKSNSYPKFSSFFKNITIYLDQSLYPDNHVIQWVSARSPVLHEGFEVKRKGDKEFSAVIRLEMNYVPEKFKLSQALSEVLGIEMDTRPRILASIWHYVKVKRLQNSNDPSCFTCDSALQKVFGEEKMKFSMVSNKLSQHLTTPRPIHIEHKIKLSGTCPVGTTCYDVLVDVPIPVGKDMSTFLANTDMNEEIEACDELIRGAIKKLHKHNRRRSFFVGFSQSPAEFINTLIASQSKDLKLAAGDIKQIAEKERFSNFYNQSW 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43111541 43113028 - Bma008427.1 Bma12g01080 92506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01080 495 MobiDBLite consensus disorder prediction 123 137 - -
Bma12g01080 495 SUPERFAMILY SWIB/MDM2 domain 293 383 IPR036885 -
Bma12g01080 495 Pfam SWIB/MDM2 domain 302 373 IPR003121 -
Bma12g01080 495 Gene3D SWIB/MDM2 domain 295 380 IPR036885 -
Bma12g01080 495 SMART swib_2 299 378 IPR019835 -
Bma12g01080 495 PANTHER SWI/SNF COMPLEX COMPONENT SNF12 HOMOLOG ISOFORM X1 76 495 - -
Bma12g01080 495 MobiDBLite consensus disorder prediction 76 119 - -
Bma12g01080 495 MobiDBLite consensus disorder prediction 1 64 - -
Bma12g01080 495 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 76 495 - -
Bma12g01080 495 MobiDBLite consensus disorder prediction 76 137 - -
Bma12g01080 495 CDD SWIB_like 305 373 - -
Bma12g01080 495 ProSiteProfiles SWIB/MDM2 domain profile. 298 375 IPR003121 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01080 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D - zju:107404542 708.368
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01080 Bma-Chr12:43111541 Bma06g00419 Bma-Chr6:14991701 4.65E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g121 . . . . . . . Bma12g01080 . . . Cma11g00039 . Car11g00035 . . Cpe04g01610 . . . . . . . . . . . . . . . . . Cone19ag0204 . . . . . . . . . . . . . . Cmo11g00040 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001873 2 3 1 1 2 2 3 1 2 2 2 1 3 2 1 3 1 5 3 2 2 2 1 3 3 1 2 5 3 2 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58172 PF02201 SWIB 8.40E-21 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01080 Bma_Chr12 FPKM 1.951852 1.467108 2.749638 3.025418 8.071571 8.958311 7.046012 8.589283 8.087758 7.577211