Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01084 ATGGACTGCAATAAAGAGATTGCCATTAAAGCGAAGGCAGTTGCCGAGAAGAAGCTCGCAGACTTAGATATTGTTGGTGCAAAAAAGTTTGCCACGATTGCTCAGAACTTGTATCCCGAACTGGACGGTCTTTCTCAACTTCATACAACTCTCAATGTTTATCTCTCTGTTCAGAGAAGAACCAATGGGGAGATTGACTGGTACAAGGTTCTCAGAGTTGAACCTTCGGCCGATGATGACACAATCCGGCAACATTACCTAAAACTTGCCGTTGGTCTTCACCCCGACAGAAACCAATCAGTTGGTGTGAATGGGGCATTTAAACTCATTTCCAGAGCTTGGAGTTTATTATCCAACAAAGCTGAGCGAACTGTTTATGATGAAAAACTAAACACATCATCAGCTGCTGGTCGGGATGTTATAAATGATATTGCGAGAAATGATGGCTCCGACTCTCGGAATTGGAGAAGTGTTCCTCAGTGTAGACCTCCGCTGTCTACTCGTCCAGTGAAGAACACATTTTGGGCTATGTGCGGTGCATGCAAAGTTCAGTTTGAGTATCTTCGAACTTATCTTAATCGCACTCTCATTTGCTCAAACTGCAGTTTGTCTTTTTTGGCTGTTGAAATTCCAGCACCGCCTTTAGATTCCGGTGATTCGTTCTCATTGGGGCCTAATATGCTTCAAACATCGAATGACGCTGAAAGCACATCATCTTCTGGTTCAAAGCTAGGAACAGCTGGATATATGGGTACGAATGAATCGTGGAGAAAACCTTTCCCCTCGGTGAGTTTATTTGGATCAGCTTCTTCAGATGTTATTGGACCAACATTTGGACAGATGAAGAAGAAGCATAAGTCTGCTTCTAGGTCTGCTACGATAGACAAGTCTTTCCACAGTGAAGCTTATCCTTTTGAGAAGTCAATTTTTACTCATGGTTCTAGTATACCCAAAGAACTTCAGCTCAAGAAAACCAGACGCATAACTAAACCTATCTTTAATGGTCGTTGTAGAGATTTAGGAGAACCAAGGGCAGCAGAGAATGTGGGGACTTCGAATGGAAGGTCATTGGATTTCCATAAACATGAATTAGGAAGAGTTAGGATTGGTGGGAACAATCAATCTATTTATAGACGGGAGTTTACACAGCATGAAGTACGAAATATGCTGGTTGAGAAAGCAAGGAGTGAGATCCGAAAGAAGCTTAAGGAATGGAAACTGGAAGAGATGCCGAGAAATATAGAAAAATTACCTGCTTCTAATAAGATTATGAGCAATACGGATAAAGAACTTGATGCTTCCACAGGTCTAAAAGAGAATGCAGATAGCAAGAATGGTTTGATTTTTGAGCGCTCCTGTCAGAATTCCGGCGAGAATTCTGTATTTGAGGGCTCGGATCCTTTCTCTATGACTGTTCCTGATCCAGATTTCCATGATTTTGACAAAGATCGAACAGAAAAATCATTTTGTAGTAATCAGATTTGGGCAGTTTATGATGACGATGACGGAATGCCTCGATATTATGCTATGATTCATAATGTTATATCCTTGAAACCATTTAAGATGCGGATCAGCTGGCTTAACTCCAAAACTAATACCGAACTATCACCTTTGAATTGGGTTGGTTGTGGATTTCCCAAGACTAGTGGGGAGTTCTGGATAGGAAAGAGTGAAGTCAATGGATATCTCAATTCTTTCTCACACAAGATTAGCTGGATAAAAGGCAGTAGAGGAGTTGTTCACATATATCCTAAGAAGGGAGAGGTATGGGCTCTGTACAGGAATTGGTCGCCGGAGTGGAATCAGTTTACGCCGGACGAAATTATACATAAATATGATATGGTTGAAGTGATCGAAGATTACAACGAAGAGAGAGGTGTAGTCATTGTTCCTCTTGTCAAAGTCGATGGTTTCAATACAGTTTTTCGGCAGCACTTGGACGCTAACCAAAAAAGGGAAATTCCAAGAGCAGAGATGTTTCGATTCTCTCACCAGATCCCGTCTTACTTACTTACTGGCATCGAAGGTCGAAACGCCCCTGCTGGTTGCCGGGAGCTGGATCCGGCAGCCACTCCTCTTCAGGAAGCAAAAGAAACACAGGAGAGAAATACGGGTGAGGTGGCCGAAAGTGCAAAGATCGAAATTCCACAAGATGTCAAAAACGGTGACGGCCGAAATGCTGAAGGAGACGCGGCAATGAAGAAAGAGACGAAAACCGAAGAGAGAACGACCAAGGTATATAGGAGGAAAAGATCCAGAGAACAAGAAAATGCTTGTGGATAG 2283 42.49 MDCNKEIAIKAKAVAEKKLADLDIVGAKKFATIAQNLYPELDGLSQLHTTLNVYLSVQRRTNGEIDWYKVLRVEPSADDDTIRQHYLKLAVGLHPDRNQSVGVNGAFKLISRAWSLLSNKAERTVYDEKLNTSSAAGRDVINDIARNDGSDSRNWRSVPQCRPPLSTRPVKNTFWAMCGACKVQFEYLRTYLNRTLICSNCSLSFLAVEIPAPPLDSGDSFSLGPNMLQTSNDAESTSSSGSKLGTAGYMGTNESWRKPFPSVSLFGSASSDVIGPTFGQMKKKHKSASRSATIDKSFHSEAYPFEKSIFTHGSSIPKELQLKKTRRITKPIFNGRCRDLGEPRAAENVGTSNGRSLDFHKHELGRVRIGGNNQSIYRREFTQHEVRNMLVEKARSEIRKKLKEWKLEEMPRNIEKLPASNKIMSNTDKELDASTGLKENADSKNGLIFERSCQNSGENSVFEGSDPFSMTVPDPDFHDFDKDRTEKSFCSNQIWAVYDDDDGMPRYYAMIHNVISLKPFKMRISWLNSKTNTELSPLNWVGCGFPKTSGEFWIGKSEVNGYLNSFSHKISWIKGSRGVVHIYPKKGEVWALYRNWSPEWNQFTPDEIIHKYDMVEVIEDYNEERGVVIVPLVKVDGFNTVFRQHLDANQKREIPRAEMFRFSHQIPSYLLTGIEGRNAPAGCRELDPAATPLQEAKETQERNTGEVAESAKIEIPQDVKNGDGRNAEGDAAMKKETKTEERTTKVYRRKRSREQENACG 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43127933 43130215 - Bma008430.1 Bma12g01084 92510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01084 760 Pfam Domain of unknown function (DUF3444) 469 674 IPR024593 -
Bma12g01084 760 PANTHER BNAC03G44070D PROTEIN 1 707 - -
Bma12g01084 760 SUPERFAMILY Chaperone J-domain 55 130 IPR036869 -
Bma12g01084 760 PANTHER HEAT SHOCK PROTEIN-LIKE 1 707 - -
Bma12g01084 760 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Bma12g01084 760 SMART dnaj_3 65 122 IPR001623 -
Bma12g01084 760 CDD DnaJ 66 119 IPR001623 -
Bma12g01084 760 Gene3D DnaJ domain 54 143 IPR036869 -
Bma12g01084 760 MobiDBLite consensus disorder prediction 691 760 - -
Bma12g01084 760 Pfam DnaJ domain 66 127 IPR001623 -
Bma12g01084 760 PRINTS DnaJ domain signature 86 101 IPR001623 -
Bma12g01084 760 PRINTS DnaJ domain signature 102 122 IPR001623 -
Bma12g01084 760 PRINTS DnaJ domain signature 68 86 IPR001623 -
Bma12g01084 760 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Bma12g01084 760 MobiDBLite consensus disorder prediction 716 760 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01084 - - - cmo:103502316 646.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00381 Bma-Chr8:8610936 Bma12g01084 Bma-Chr12:43127933 0 dispersed
Bma12g01084 Bma-Chr12:43127933 Bma12g01193 Bma-Chr12:44751694 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g87 . . . . . . . Bma12g01084 . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0013 . . . . . . . Blo15g00093 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011824 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01084 Bma_Chr12 FPKM 0.597665 0.10594 0.0 0.1217 0.557136 0.759097 0.489927 0.365956 0.267664 0.540503