Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01097 GCCATGGGGATGGAAATTGAAAATTCGAAAAACAATGCTTCTGATCAGGATAATCCCAGATTCTCTATCAATGGTTTGAGGTATTGCACAGCTCGGTTGAGGAGGTTGTATAAATCTTTGAAGTTTACACATGGCCGTGGAAAGTATACCCGCAGAGCCATAACTCTATCAACTATTAGTGAAGTGAGGTTTCTACACGTAGTTCTTTATACAGCAGAGAGAGCGTGGAGTCATGCGATGGAGAAAAGACAACTCCCAGACGGCCCAAATGCACGTCAACGTGTCTATTTGATTGGCCGTCTGAGGAAGGCAGCAAAATGGGCTACGCTGTTTGCACAGTTATGTGCTGGAAAAGGAGACCCTAGAACCTCTTTGGAAGCTGAAGCTTATGCTTCATATATGACAGGGAACTTGTTGTTTGAAAGGGATCAAAGTTGGGATATTGCATTGATGAACTTCAAAAGATCTAGGGCTGTTTACGAGGAACTTGGGAAAGTTGGAGACATTGAAAATCAAGTGTTGTGTCGAGAGCGTGTTGAAGAGCTAGAGCCTAGTATTCGATACTGCTTGCACAAGATTGGACAGTCAAACTTACAAGCCTCTGAACTTTTACACATTGGAGAATTGGAAGGTCCTGCTCTGGATCTTTTTAAGGCAAAATTAGAGGTTGTTATGTCAGAGGCCAGATCTCAACAAGCTGCTTCAATGACTGAGTTTCATTGGCTTGGTCAGAAATATCCAATATCCAATGCAAAAACAAGAGTTGCCATTCTGAAAGCTAAAGATTTGGAGAAAGACTTAAAAGGTTCAGAAGCAGATTCACACACAGCTGAAAAGAGACTATCTATATTTGATAAAATCTTTGCTGCATATCACGAGGCAAGGAGTTCGATTCGCAGTGATTTGACTGGTGCTGGAAATGCCGAAAATGCCAAAGAAGATTTAAATGGTCTTGATAAAGCTGTCAGTGCTGTAATTGGACAAAGAACCATTGAACGCAACCTGTTATTGGTGAAAATTGCTAAAAGTAAGCTTTCTCGACTCCATGAGGACAAGAATGAGAAAGTAACAAAGCCTGAGGAGCTGGTTCGCTTATATGATCTTTTGTTACAGAATGTTGCTGATCTTTGTGATTTAGTAAGTTCTGGAAGAGATAAGAAACCGGAAGAGGTGCAATTTGCTGAAGAATGTGCTCTAAAAAGTTTGGTTTTCCGAGGAGAAAGGTGCTTTTACCTTGGCAAATCATACAGCTTGGCTGGGAAACGTGGAGAAGCTTATGCACTTTTTAGCCGTGCTCTCTCAGTTGCAAATGATGCCCTTCAGAAATTTAACAGTTTAAATGGTAGTGATAAGGAGATTATTAAAGAGTTGAAGACATTACGGGATGAATGCAGATCGAACTGTTGTATTGAGCATGCAACTGGGATTATGGAGGAGATGAAGACTGAGGACAATCTTTCGAAAAAGATATCCAATATATCGTTTGGAGCAGAAAAGTTGGACAAATTCCTTCTCCAAAATCTCGATGAGTACGAGTCAGCAGTCAATATTTCTAACATCAAGAATGCTCCTCGAATCGAACCATTTCCTCCTTCCTTCCAGGCGATTCCACGCAATCCCATCGTGCTGGATCTTGCCTATAATTTCATTGACTTCCCATCCCTTGAGAACAGAGTGAAGAAAGACAAAAAGGGTTTTATCAGCAGGCTTTGGAGATGA 1719 41.19 AMGMEIENSKNNASDQDNPRFSINGLRYCTARLRRLYKSLKFTHGRGKYTRRAITLSTISEVRFLHVVLYTAERAWSHAMEKRQLPDGPNARQRVYLIGRLRKAAKWATLFAQLCAGKGDPRTSLEAEAYASYMTGNLLFERDQSWDIALMNFKRSRAVYEELGKVGDIENQVLCRERVEELEPSIRYCLHKIGQSNLQASELLHIGELEGPALDLFKAKLEVVMSEARSQQAASMTEFHWLGQKYPISNAKTRVAILKAKDLEKDLKGSEADSHTAEKRLSIFDKIFAAYHEARSSIRSDLTGAGNAENAKEDLNGLDKAVSAVIGQRTIERNLLLVKIAKSKLSRLHEDKNEKVTKPEELVRLYDLLLQNVADLCDLVSSGRDKKPEEVQFAEECALKSLVFRGERCFYLGKSYSLAGKRGEAYALFSRALSVANDALQKFNSLNGSDKEIIKELKTLRDECRSNCCIEHATGIMEEMKTEDNLSKKISNISFGAEKLDKFLLQNLDEYESAVNISNIKNAPRIEPFPPSFQAIPRNPIVLDLAYNFIDFPSLENRVKKDKKGFISRLWR 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43237100 43248412 + Bma008441.1 Bma12g01097 92523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01097 572 PIRSF SRP68 19 566 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Bma12g01097 572 Coils Coil 260 280 - -
Bma12g01097 572 Gene3D - 9 195 IPR038253 GO:0003723
Bma12g01097 572 PANTHER SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN 27 571 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Bma12g01097 572 CDD SRP68-RBD 27 191 IPR034652 GO:0003723
Bma12g01097 572 Pfam RNA-binding signal recognition particle 68 27 550 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01097 K03107 SRP68; signal recognition particle subunit SRP68 - csv:101217111 905.205
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g25 . . Bda06g00707 . . . . Bma12g01097 . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0261 Cone19ag0246 . . . . . Blo15g00188 . . Bpe07g00909 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005497 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01097 Bma_Chr12 FPKM 8.872546 9.095771 15.116726 16.626429 12.459441 12.792175 12.402634 19.445976 18.571032 18.65007