Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01099 ATGGCTTATACCAGCCAACTGCCCTGCGACGGAGATGGCACTTGCATGGTCTGCAAGGCGAAGCCTCTGGAGGAAGAGAAACTCATTTGCAATACTTGCGCCACACCGTGGCATGTTACCTGTCTCCCCACCCCTCCTGAAACCCTAGCTTCGACTCTCCAATGGGATTGCCCCGACTGTATTCCGCAGTCCGGTGACTGCGTAGCCAGCGATAATGTCCCCGTAGACGATTCTTCCAGCGGCTTGATCGCCGCTATCCGAGCGATTGAGGGTGATGCTTCGCTGACTGATAGAGAGAAGGCGAAGAGGCGTCAGGAGCTTTTGAGCGGGAAGAATCGGTCTGAGAATGGGGTAGAAAATTTGAGCAAGGTTAAGCGGAAGAGAAGCGACGATGTTTTGGGAGTTCTTGACGAGAGTCTGAACTGTTCATTTTGTATGCAGTTACCTGAAAGGCCTGTCACGACTCCTTGTGGACACAATTTCTGCCTAAAATGCTTCCAAAAATGGATTGGACAAGGAAAAAAAACCTGTGCAAAATGTCGCTGCTTGATTCCTTCAAAAATGGCGAGTCAGCCTCGCATCAATTCTGCTCTTGTAGTTGCGATTCGTTTGGCCAAGATGTCAAAGTCAAATGTGGCTGGTGACTCTCAACAAGTTCAAAAAGTTCATTTTGTACACAATCAGCATAGGCCAGATAAGGCATACACTACAGAGCGGGCACAGAGGAGCGGAAAGTCCAACGCAGCGAGCGGGAAAATATTTGTTACAATCCCATCTGATCATTTTGGACCTATCCCGGCGGAAAATGATCCTGGGAGAAATCAGGGTGTGCTAGTGGGTGAAACATGGGAGGATAGGTTGGAGTGTCGACAATGGGGAGCTCACTTTCCTCATGTGGCAGGCATCGCAGGTCAGTCAGACTATGGTGCACAATCAGTAGTTCTTTCTGGAGGTTACCAAGATGACGAGGATCATGGAGAGTGGTTTCTCTACACTGGAAGTGGTGGTAGAGACCTTAGTGGCAATAAACGGACAAGCAAGGACCAGTCATTTGACCAGAAATTTGAGAAAATGAACAAAGCACTCAAAGTTAGTTGCTTGATGGGTTATCCTGTTAGGGTAGTTCGGTCACACAAAGAGAAACGCTCTTCATATGCCCCAGAGAAATGTTTGCGATATGATGGAGTGTATAGGATTGAGAAATGTTGGAGAAAAGTAGGAGTTCAGGGCTTTAAGGTGTGTAGGTACTTATTTGTCAGATGTGACAATGATCCAGCTCCTTGGACCAGTGATGAACATGGAGATCGGCCTAGAGCCTTTCCTGGCATTGCAGAATTGAAAAAAGCAATGGACATCACAGATAGGAAAGGAAGCCCATCATGGGATTTCAATGAGGAAGATAATTGCTGGATGTGGAAGAAACCTCCACCAGCAAGCAAGAAATCAATTGACATAGAAGGTTCTGATTCAAGAAAGAGATCCATAAGAGCCATAAGAAAAGCCCAGAAAATGAATGTTAGAGAGAGATTGTTGAAAGAATTTAGCTGCTCTATATGCAGGCAGGTAATGATTCACCCTGTCACAACTCCATGTGCACATAATTTTTGCAAGACATGCTTGGAAGGCCGGTTTGCTGATAAGACATTCATGAGGGACAGAAGCAGAGGTGGAAGAACCCTTCGATGCCAAAAGAATATCATGATTTGTCCTTCTTGTCCTTTGGACATCTCTGATTTTCTTCAGAATCTTCAGGTAAATACAGAGTTACTTGACGTAATCGAAACACTAAAAAGTCAGAATGAAGAGAATGGTGAGTCTGCAGACGAGTCATCTGAGGAGGAAATTACTGAAAAATCAGAGGAACCAAATAAGTACAATGAAACCGGGGTAGCTCTTCTCAGCCAAGTGAGTCCAAACAGAGGTCAAAAGCGAAAGAAAATTGACAAAAGGGAAGATGCTAATGCTGCTAAAGCTATAGACTCAGAAGTGGAGAAATCAGGATTATCTGAAGAACGTGATGAGTAA 2025 45.28 MAYTSQLPCDGDGTCMVCKAKPLEEEKLICNTCATPWHVTCLPTPPETLASTLQWDCPDCIPQSGDCVASDNVPVDDSSSGLIAAIRAIEGDASLTDREKAKRRQELLSGKNRSENGVENLSKVKRKRSDDVLGVLDESLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKKTCAKCRCLIPSKMASQPRINSALVVAIRLAKMSKSNVAGDSQQVQKVHFVHNQHRPDKAYTTERAQRSGKSNAASGKIFVTIPSDHFGPIPAENDPGRNQGVLVGETWEDRLECRQWGAHFPHVAGIAGQSDYGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKMNKALKVSCLMGYPVRVVRSHKEKRSSYAPEKCLRYDGVYRIEKCWRKVGVQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRAFPGIAELKKAMDITDRKGSPSWDFNEEDNCWMWKKPPPASKKSIDIEGSDSRKRSIRAIRKAQKMNVRERLLKEFSCSICRQVMIHPVTTPCAHNFCKTCLEGRFADKTFMRDRSRGGRTLRCQKNIMICPSCPLDISDFLQNLQVNTELLDVIETLKSQNEENGESADESSEEEITEKSEEPNKYNETGVALLSQVSPNRGQKRKKIDKREDANAAKAIDSEVEKSGLSEERDE 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43253364 43258356 - Bma008443.1 Bma12g01099 92525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01099 674 Pfam Zinc finger, C3HC4 type (RING finger) 142 180 IPR018957 GO:0046872
Bma12g01099 674 SMART PHD_3 14 61 IPR001965 -
Bma12g01099 674 CDD RING-HC 142 180 - -
Bma12g01099 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 209 IPR013083 -
Bma12g01099 674 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 665 IPR045134 -
Bma12g01099 674 SUPERFAMILY RING/U-box 133 188 - -
Bma12g01099 674 SUPERFAMILY FYVE/PHD zinc finger 8 63 IPR011011 -
Bma12g01099 674 Pfam SAD/SRA domain 272 423 IPR003105 -
Bma12g01099 674 MobiDBLite consensus disorder prediction 641 674 - -
Bma12g01099 674 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 665 - -
Bma12g01099 674 SUPERFAMILY PUA domain-like 247 438 IPR015947 -
Bma12g01099 674 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Bma12g01099 674 SMART G9a_1 267 424 IPR003105 -
Bma12g01099 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 626 IPR013083 -
Bma12g01099 674 ProSiteProfiles Zinc finger RING-type profile. 516 572 IPR001841 -
Bma12g01099 674 Gene3D - 243 439 IPR036987 -
Bma12g01099 674 MobiDBLite consensus disorder prediction 598 674 - -
Bma12g01099 674 SUPERFAMILY RING/U-box 509 600 - -
Bma12g01099 674 Pfam RING-type zinc-finger 516 562 IPR027370 -
Bma12g01099 674 SMART ring_2 15 60 IPR001841 -
Bma12g01099 674 SMART ring_2 142 180 IPR001841 -
Bma12g01099 674 SMART ring_2 516 572 IPR001841 -
Bma12g01099 674 ProSitePatterns Zinc finger RING-type signature. 531 540 IPR017907 -
Bma12g01099 674 ProSiteProfiles Zinc finger RING-type profile. 142 181 IPR001841 -
Bma12g01099 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 77 IPR013083 -
Bma12g01099 674 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Bma12g01099 674 ProSiteProfiles YDG domain profile. 272 420 IPR003105 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00283 Bma12g01099 CCT
Bma08g00283 Bma12g01099 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00863 Bma-Chr9:47768322 Bma12g01099 Bma-Chr12:43253364 7.95E-10 dispersed
Bma12g01099 Bma-Chr12:43253364 Bma01g02661 Bma-Chr1:84108402 4.93E-15 dispersed
Bma02g00379 Bma-Chr2:5935407 Bma12g01099 Bma-Chr12:43253364 1.82E-07 transposed
Bma12g01099 Bma-Chr12:43253364 Bma08g00283 Bma-Chr8:3871694 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01099 K10638 - csv:101220457 946.421