Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma12g01099 | ATGGCTTATACCAGCCAACTGCCCTGCGACGGAGATGGCACTTGCATGGTCTGCAAGGCGAAGCCTCTGGAGGAAGAGAAACTCATTTGCAATACTTGCGCCACACCGTGGCATGTTACCTGTCTCCCCACCCCTCCTGAAACCCTAGCTTCGACTCTCCAATGGGATTGCCCCGACTGTATTCCGCAGTCCGGTGACTGCGTAGCCAGCGATAATGTCCCCGTAGACGATTCTTCCAGCGGCTTGATCGCCGCTATCCGAGCGATTGAGGGTGATGCTTCGCTGACTGATAGAGAGAAGGCGAAGAGGCGTCAGGAGCTTTTGAGCGGGAAGAATCGGTCTGAGAATGGGGTAGAAAATTTGAGCAAGGTTAAGCGGAAGAGAAGCGACGATGTTTTGGGAGTTCTTGACGAGAGTCTGAACTGTTCATTTTGTATGCAGTTACCTGAAAGGCCTGTCACGACTCCTTGTGGACACAATTTCTGCCTAAAATGCTTCCAAAAATGGATTGGACAAGGAAAAAAAACCTGTGCAAAATGTCGCTGCTTGATTCCTTCAAAAATGGCGAGTCAGCCTCGCATCAATTCTGCTCTTGTAGTTGCGATTCGTTTGGCCAAGATGTCAAAGTCAAATGTGGCTGGTGACTCTCAACAAGTTCAAAAAGTTCATTTTGTACACAATCAGCATAGGCCAGATAAGGCATACACTACAGAGCGGGCACAGAGGAGCGGAAAGTCCAACGCAGCGAGCGGGAAAATATTTGTTACAATCCCATCTGATCATTTTGGACCTATCCCGGCGGAAAATGATCCTGGGAGAAATCAGGGTGTGCTAGTGGGTGAAACATGGGAGGATAGGTTGGAGTGTCGACAATGGGGAGCTCACTTTCCTCATGTGGCAGGCATCGCAGGTCAGTCAGACTATGGTGCACAATCAGTAGTTCTTTCTGGAGGTTACCAAGATGACGAGGATCATGGAGAGTGGTTTCTCTACACTGGAAGTGGTGGTAGAGACCTTAGTGGCAATAAACGGACAAGCAAGGACCAGTCATTTGACCAGAAATTTGAGAAAATGAACAAAGCACTCAAAGTTAGTTGCTTGATGGGTTATCCTGTTAGGGTAGTTCGGTCACACAAAGAGAAACGCTCTTCATATGCCCCAGAGAAATGTTTGCGATATGATGGAGTGTATAGGATTGAGAAATGTTGGAGAAAAGTAGGAGTTCAGGGCTTTAAGGTGTGTAGGTACTTATTTGTCAGATGTGACAATGATCCAGCTCCTTGGACCAGTGATGAACATGGAGATCGGCCTAGAGCCTTTCCTGGCATTGCAGAATTGAAAAAAGCAATGGACATCACAGATAGGAAAGGAAGCCCATCATGGGATTTCAATGAGGAAGATAATTGCTGGATGTGGAAGAAACCTCCACCAGCAAGCAAGAAATCAATTGACATAGAAGGTTCTGATTCAAGAAAGAGATCCATAAGAGCCATAAGAAAAGCCCAGAAAATGAATGTTAGAGAGAGATTGTTGAAAGAATTTAGCTGCTCTATATGCAGGCAGGTAATGATTCACCCTGTCACAACTCCATGTGCACATAATTTTTGCAAGACATGCTTGGAAGGCCGGTTTGCTGATAAGACATTCATGAGGGACAGAAGCAGAGGTGGAAGAACCCTTCGATGCCAAAAGAATATCATGATTTGTCCTTCTTGTCCTTTGGACATCTCTGATTTTCTTCAGAATCTTCAGGTAAATACAGAGTTACTTGACGTAATCGAAACACTAAAAAGTCAGAATGAAGAGAATGGTGAGTCTGCAGACGAGTCATCTGAGGAGGAAATTACTGAAAAATCAGAGGAACCAAATAAGTACAATGAAACCGGGGTAGCTCTTCTCAGCCAAGTGAGTCCAAACAGAGGTCAAAAGCGAAAGAAAATTGACAAAAGGGAAGATGCTAATGCTGCTAAAGCTATAGACTCAGAAGTGGAGAAATCAGGATTATCTGAAGAACGTGATGAGTAA | 2025 | 45.28 | MAYTSQLPCDGDGTCMVCKAKPLEEEKLICNTCATPWHVTCLPTPPETLASTLQWDCPDCIPQSGDCVASDNVPVDDSSSGLIAAIRAIEGDASLTDREKAKRRQELLSGKNRSENGVENLSKVKRKRSDDVLGVLDESLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKKTCAKCRCLIPSKMASQPRINSALVVAIRLAKMSKSNVAGDSQQVQKVHFVHNQHRPDKAYTTERAQRSGKSNAASGKIFVTIPSDHFGPIPAENDPGRNQGVLVGETWEDRLECRQWGAHFPHVAGIAGQSDYGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKMNKALKVSCLMGYPVRVVRSHKEKRSSYAPEKCLRYDGVYRIEKCWRKVGVQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRAFPGIAELKKAMDITDRKGSPSWDFNEEDNCWMWKKPPPASKKSIDIEGSDSRKRSIRAIRKAQKMNVRERLLKEFSCSICRQVMIHPVTTPCAHNFCKTCLEGRFADKTFMRDRSRGGRTLRCQKNIMICPSCPLDISDFLQNLQVNTELLDVIETLKSQNEENGESADESSEEEITEKSEEPNKYNETGVALLSQVSPNRGQKRKKIDKREDANAAKAIDSEVEKSGLSEERDE | 674 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 43253364 | 43258356 | - | Bma008443.1 | Bma12g01099 | 92525 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma12g01099 | 674 | Pfam | Zinc finger, C3HC4 type (RING finger) | 142 | 180 | IPR018957 | GO:0046872 | |
Bma12g01099 | 674 | SMART | PHD_3 | 14 | 61 | IPR001965 | - | |
Bma12g01099 | 674 | CDD | RING-HC | 142 | 180 | - | - | |
Bma12g01099 | 674 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 209 | IPR013083 | - | |
Bma12g01099 | 674 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 1 | 665 | IPR045134 | - | |
Bma12g01099 | 674 | SUPERFAMILY | RING/U-box | 133 | 188 | - | - | |
Bma12g01099 | 674 | SUPERFAMILY | FYVE/PHD zinc finger | 8 | 63 | IPR011011 | - | |
Bma12g01099 | 674 | Pfam | SAD/SRA domain | 272 | 423 | IPR003105 | - | |
Bma12g01099 | 674 | MobiDBLite | consensus disorder prediction | 641 | 674 | - | - | |
Bma12g01099 | 674 | PANTHER | FINGER PROTEIN, PUTATIVE-RELATED | 1 | 665 | - | - | |
Bma12g01099 | 674 | SUPERFAMILY | PUA domain-like | 247 | 438 | IPR015947 | - | |
Bma12g01099 | 674 | ProSiteProfiles | Zinc finger PHD-type profile. | 12 | 63 | IPR019787 | - | |
Bma12g01099 | 674 | SMART | G9a_1 | 267 | 424 | IPR003105 | - | |
Bma12g01099 | 674 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 501 | 626 | IPR013083 | - | |
Bma12g01099 | 674 | ProSiteProfiles | Zinc finger RING-type profile. | 516 | 572 | IPR001841 | - | |
Bma12g01099 | 674 | Gene3D | - | 243 | 439 | IPR036987 | - | |
Bma12g01099 | 674 | MobiDBLite | consensus disorder prediction | 598 | 674 | - | - | |
Bma12g01099 | 674 | SUPERFAMILY | RING/U-box | 509 | 600 | - | - | |
Bma12g01099 | 674 | Pfam | RING-type zinc-finger | 516 | 562 | IPR027370 | - | |
Bma12g01099 | 674 | SMART | ring_2 | 15 | 60 | IPR001841 | - | |
Bma12g01099 | 674 | SMART | ring_2 | 142 | 180 | IPR001841 | - | |
Bma12g01099 | 674 | SMART | ring_2 | 516 | 572 | IPR001841 | - | |
Bma12g01099 | 674 | ProSitePatterns | Zinc finger RING-type signature. | 531 | 540 | IPR017907 | - | |
Bma12g01099 | 674 | ProSiteProfiles | Zinc finger RING-type profile. | 142 | 181 | IPR001841 | - | |
Bma12g01099 | 674 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 77 | IPR013083 | - | |
Bma12g01099 | 674 | ProSitePatterns | Zinc finger PHD-type signature. | 15 | 60 | IPR019786 | - | |
Bma12g01099 | 674 | ProSiteProfiles | YDG domain profile. | 272 | 420 | IPR003105 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma08g00283 | Bma12g01099 | CCT | |
Bma08g00283 | Bma12g01099 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma09g00863 | Bma-Chr9:47768322 | Bma12g01099 | Bma-Chr12:43253364 | 7.95E-10 | dispersed | |
Bma12g01099 | Bma-Chr12:43253364 | Bma01g02661 | Bma-Chr1:84108402 | 4.93E-15 | dispersed | |
Bma02g00379 | Bma-Chr2:5935407 | Bma12g01099 | Bma-Chr12:43253364 | 1.82E-07 | transposed | |
Bma12g01099 | Bma-Chr12:43253364 | Bma08g00283 | Bma-Chr8:3871694 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma12g01099 | K10638 | - | csv:101220457 | 946.421 |