Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01100 ATGAGCATATTGGTTGAGAGTTTAATGAAAAATGGGGCAAGCAAATACGCCCAGATGGTTTCCCATAAGATGCCTAAAGATATATTGACATGGAATTCTCAAATTGGGGCTTGTGTTAAGAATGCGCACTATAACGAAGCGCTTAAAATTTTTAGAACTATGCTAAACTCGAATGTTCAACCCGATGGATACACATTTGCGTCTGTGATTTCTGGCTGTGCACATCTTGGATCTCTCAATTCGGCACAGTGGGTTCATGGTTTGATGATCGAGAAAAGGATCAAATTGAATTATATACTAAGTGCAGGACTTATAGACATGTACTCAAAGTGTGGTAGAATCCAAACAGCTAGAGAACTGTTTAATCATGCTCCTCGTAATGAAGTATCAGTTTGGAATGCAATGATTAATGGGCTGGCAGTGCATGGCCTGGCTCTCGAAGCAATTGAAGTATTTTCGAAAATGGAGGCCGAGAATGTTCCCCCTGATTTGATCACTTTTATTGGTATTTTAACAGCTTGCAGTCATTGTGGGTTGGTCGAAGAGGGTCAAAAGTTCTTTGATTTGATGAGATTGCGTTATTCGATTCGGCCGGAACTTGAACATTATGGAGCCATGGTTGATCTCTTCTGTAGAGCTGGCCGTTTGAAAGAGGCTCATGCCCTGATCAAGGACATGCCAATGGAGCCTGATGTTGTTATATGGAGGTCATTTCTCAGTGCTTGCAGAATTTACAAAAATCAAGAGTTGGGGGAAAGTGCTATTGCAAATATCTCCGATCCCAAAGGTGGGAACTATGTCTTACTGTCCAACATTTATTGCTCTCTTGAGAGATGGGATAGATCAGAGAAAGTCAGAGAAATGATGAGGGAAAATGGAATTCACAAGAACAGTGGAAAGAGCTGGGTTGAACTGGGCAGCGCCATTCACAGCTTTAGAGCTGGTGACTCTTCACACTCTGAAAGTAATGCAATCTATGAAGTGTTGAAAAGATTACTTCACTTAACTAAAGTGAAGGGCTATACTCCTATGACGGAATTGGTCTTCATGGATGTTTCAGAAGAGGAAAAGGAAGAAAATTTGAATCTTCACAGTGAAAAGTTGGCATTGGCTTATGGATTCCTTAAAACTAGCCCTGGAACTGAAATTAGGATTTTGAAAAACCTGCGTATTTGTAATGACTGCCATTGTTGGATGAAAATGGTTTCGAAAATCATTGGGAGAGTAATAATCATGAGGGATCGGACCCGTTTTCATAGATTCGAGGCTGGATTATGCTCCTGCAGAGATAATTGGTAG 1299 40.8 MSILVESLMKNGASKYAQMVSHKMPKDILTWNSQIGACVKNAHYNEALKIFRTMLNSNVQPDGYTFASVISGCAHLGSLNSAQWVHGLMIEKRIKLNYILSAGLIDMYSKCGRIQTARELFNHAPRNEVSVWNAMINGLAVHGLALEAIEVFSKMEAENVPPDLITFIGILTACSHCGLVEEGQKFFDLMRLRYSIRPELEHYGAMVDLFCRAGRLKEAHALIKDMPMEPDVVIWRSFLSACRIYKNQELGESAIANISDPKGGNYVLLSNIYCSLERWDRSEKVREMMRENGIHKNSGKSWVELGSAIHSFRAGDSSHSESNAIYEVLKRLLHLTKVKGYTPMTELVFMDVSEEEKEENLNLHSEKLALAYGFLKTSPGTEIRILKNLRICNDCHCWMKMVSKIIGRVIIMRDRTRFHRFEAGLCSCRDNW 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43273215 43274513 + Bma008444.1 Bma12g01100 92526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01100 432 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Bma12g01100 432 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 27 61 IPR002885 -
Bma12g01100 432 Pfam PPR repeat 104 123 IPR002885 -
Bma12g01100 432 Pfam PPR repeat 202 227 IPR002885 -
Bma12g01100 432 Gene3D Tetratricopeptide repeat domain 1 102 IPR011990 GO:0005515
Bma12g01100 432 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 62 96 IPR002885 -
Bma12g01100 432 TIGRFAM PPR: pentatricopeptide repeat domain 131 163 IPR002885 -
Bma12g01100 432 TIGRFAM PPR: pentatricopeptide repeat domain 203 227 IPR002885 -
Bma12g01100 432 TIGRFAM PPR: pentatricopeptide repeat domain 30 62 IPR002885 -
Bma12g01100 432 Gene3D Tetratricopeptide repeat domain 103 331 IPR011990 GO:0005515
Bma12g01100 432 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 12 415 - -
Bma12g01100 432 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 12 415 - -
Bma12g01100 432 Pfam DYW family of nucleic acid deaminases 340 432 IPR032867 GO:0008270
Bma12g01100 432 Pfam E motif 245 304 IPR046848 -
Bma12g01100 432 Pfam PPR repeat family 129 175 IPR002885 -
Bma12g01100 432 Pfam PPR repeat family 26 74 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01100 - - - vvi:100247459 609.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01100 Bma-Chr12:43273215 Bma05g00261 Bma-Chr5:7249240 8.34E-14 dispersed
Bma12g01100 Bma-Chr12:43273215 Bma05g00256 Bma-Chr5:7098122 1.15E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g11 . . Bda06g00704 . . . . Bma12g01100 . . Cma10g00008 . Car10g00005 . . . . . . . . . . . Cla06g01789 . . . . . . . . . . . . . . . . . . Bpe07g00912 . . . . Cmo10g00006 . . . . . . Cpe18g00944 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012825 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01100 Bma_Chr12 FPKM 18.171598 18.641062 10.613475 10.723121 15.057999 15.805034 15.568267 13.719794 12.347477 12.393919