Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01103 ATGGCCTCCCTCATGAATATCTCATCTTCTCCGTCTCTGCCAATTGAAGTTATCGGTTCTGCTAAAACAAACAGTGGACGATACTGCTTGCGCATAAGAAATAGAGTGTTGTTTGGGAGGTCAATGGCTTGGTTAGCTGTTATACTATTACTAATGGCCTTCGCCGTGTCCAATTCGCATGCTATCAGGGCGAATTTTGGAAAGAAGATCAATACTGCCGTGTTCTTATCACCAAAATTTGTCCTTGGACCAGGATCAGTGGTTAACAAATATTACTACAACATCGACTTTCCAAATGGTCACATTGGTCTGAAGAGTTTCAATGCTGAAGTGGTTGACGAAACTGGGAATCCAATTCCTCTTCATGAAACGTATCTTCACCACTGGGTTGTCGGAAGATATTATCAGCGAAGTAAGGTACCAGATCCGGAAAGTTACGACTTTTTCAAGCTTAAACAATCGGATTATAAATTTGTTAGAAATAGTGGGGTCTGTCAAAATGATGTTCTTGGGCAGTATTTTGGACTTGGATCCGAAACGAGAAAAACGGCTACTTATATTCCAGATCCTTTTGGAATAGAAGTTGGTAATTCTGCAGAAATACCTCTTGGATATGAGGAAAAATGGATGCTCAATGTTCATGCTATTGATACTCGTGGTGCAGAAGATAGGTTGGGGTGCACTGAATGCAGGTGTGATCTGTATAATATTACCATTGATGAATATGGCCATCCTTTGTCACCGGATTATGTTGGAGGTTTGTTATGCTGCTATGATCAGACTCAATGCAGAGTAAAAGAACACTTTGAGGGTGAGAAGAGGAGTCTCTATCTGAGATATACTGTAAAATGGATTGATTGGGATGAGTTCATTGTACCTGTGGAGATATATATACTCGACGTCACTGATTATGAGAAACGATTGAATGAACATAAATGTCGGATCGAGTATGAAGTTGAATCTTGCCACACCACTGATCTTGCGAGTGACGAGTGCAAATATACTAAAAGAACCAGCCTTACATCACCAACTGGTGGTTACATCATTTATGGTGTTGCCCATCAGCACACTGGGGGGACTGGCTCAACTCTTTATGGAGAGGATGAAAGAGTTATATGTTCTTCATACCCAACTTATGGTGAAGGGAAGGAGGCTGGGAATGAGGCGGGCTACATCATAGGAATGTCGACTTGCTATCCCCAACCAGGTTCTGTGAATATATATCATGGGGAAACTCTGACTCTTGAATCCAATTACAGTAGCAACCAAAGGCACACTGGAGTTATGGGGCTGTTCTACATTTTGGTTGCTCAGCAACTCCCAAGACCTTTTCTTCCCTTCAATGCATCACATTCAAGCAGGTAG 1365 41.76 MASLMNISSSPSLPIEVIGSAKTNSGRYCLRIRNRVLFGRSMAWLAVILLLMAFAVSNSHAIRANFGKKINTAVFLSPKFVLGPGSVVNKYYYNIDFPNGHIGLKSFNAEVVDETGNPIPLHETYLHHWVVGRYYQRSKVPDPESYDFFKLKQSDYKFVRNSGVCQNDVLGQYFGLGSETRKTATYIPDPFGIEVGNSAEIPLGYEEKWMLNVHAIDTRGAEDRLGCTECRCDLYNITIDEYGHPLSPDYVGGLLCCYDQTQCRVKEHFEGEKRSLYLRYTVKWIDWDEFIVPVEIYILDVTDYEKRLNEHKCRIEYEVESCHTTDLASDECKYTKRTSLTSPTGGYIIYGVAHQHTGGTGSTLYGEDERVICSSYPTYGEGKEAGNEAGYIIGMSTCYPQPGSVNIYHGETLTLESNYSSNQRHTGVMGLFYILVAQQLPRPFLPFNASHSSR 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43281329 43285514 + Bma008446.1 Bma12g01103 92529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01103 454 PANTHER STRESS UP-REGULATED NOD 19 PROTEIN 45 446 IPR011692 -
Bma12g01103 454 Pfam Stress up-regulated Nod 19 69 439 IPR011692 -
Bma12g01103 454 PANTHER - 45 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01103 - - - jre:108995353 607.446
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01103 Bma-Chr12:43281329 Bma12g01104 Bma-Chr12:43294747 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g1 . . Bda06g00701 . . . . Bma12g01103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g01001 . . . Blo15g00108 . . Bpe07g00915 . . . . . . . . . . . Cpe18g00946 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000872 1 3 1 2 1 2 1 2 2 5 2 3 1 6 4 1 2 1 1 3 5 12 4 1 3 4 2 6 7 1 89
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01103 Bma_Chr12 FPKM 6.894538 7.364568 9.801989 10.497638 6.577034 8.05607 7.973697 12.215674 14.524165 14.720157