Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01110 CCAAGTGGTTCTATGGACAAGAAGCTTGAAAGCAAACTTTACATTGGTAACCTTGACTTCAGAATCACAGAGGCTGCTCTTATCAAAATGTTTTCTCCTTACGGAAAGATCGTATCCGAAGATTTTCTGTGGCATACCCGTGGTCCAAAACGGGGAGAGCCACGAGGCTTTGCTTTTATCCAGTATAGCTCCGAGGAGGAAGCTGTATTGGCCAAGGAGAAGATGCACGGAAGATTAGTTTGTGGCCGTCCGATTGTGGTGCGATTAGCTAACGAGAAAAGCACATTTGAAGGCGAATTTACAGTGGGTGAGCCGAGTAAAACAGGGCTTCGTAGTAGCATGAGTCGCAGTGCAAGAATAGCTGCAATAAAGAACAAGTTGAAAGCTTTGGAGGAGGGGGAGGAGAAGAGCTCTAGTGAGAAGAAGCAGAAGCAAGATAAGAACAGCTCTTGA 453 45.92 PSGSMDKKLESKLYIGNLDFRITEAALIKMFSPYGKIVSEDFLWHTRGPKRGEPRGFAFIQYSSEEEAVLAKEKMHGRLVCGRPIVVRLANEKSTFEGEFTVGEPSKTGLRSSMSRSARIAAIKNKLKALEEGEEKSSSEKKQKQDKNSS 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43374169 43374779 + Bma008455.1 Bma12g01110 92536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01110 150 SUPERFAMILY RNA-binding domain, RBD 7 95 IPR035979 GO:0003676
Bma12g01110 150 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 5 146 - -
Bma12g01110 150 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 85 IPR000504 GO:0003723
Bma12g01110 150 PANTHER RNA-BINDING PROTEIN 18-RELATED 5 146 - -
Bma12g01110 150 Gene3D - 2 97 IPR012677 -
Bma12g01110 150 SMART rrm1_1 12 88 IPR000504 GO:0003723
Bma12g01110 150 MobiDBLite consensus disorder prediction 130 150 - -
Bma12g01110 150 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 92 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01110 K24527 RBM18; RNA-binding protein 18 - cpap:110810337 176.792
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01110 Bma-Chr12:43374169 Bma05g01222 Bma-Chr5:51629348 3.80E-13 dispersed
Bma12g01110 Bma-Chr12:43374169 Bma09g00711 Bma-Chr9:45172261 1.05E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g748 . Blo15g00177 . . . Bpe07g00927 . . . . Cma02g01078 . Car02g00821 . . Cpe05g00641 . . . . . . . . Cla01g00094 Cam01g0096 Cec01g0096 Cco01g0097 Clacu01g0094 Cmu01g0096 Cre09g2411 . . Cone14ag0061 Cone15ag0064 . Csa05g00109 Chy09g01386 . . . Bda06g00694 . . . . Bma12g01110 . Cmo02g01095 . . . . . . . Bhi12g00787 . . . . . . . . . . . . . Lsi09g00082 . . Cme09g01931
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007148 1 7 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01110 Bma_Chr12 FPKM 25.514481 28.433781 27.522968 27.967264 23.369188 20.918188 22.921669 35.326607 36.249512 36.852215