Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01115 ATGTGGGTTTTCCGGAGAAGGGGGGCTTCTGGGTTTTCAGCTTCTTCCACAGCTGAACAAGTTACAGAAGGGGTCGGTGGATCTGGTCTCACTGCCATTGTTACAGGAGCATCGAGTGGTATCGGCACTGAAACTGCCCGTGTTCTTGCATTGCATGGAGTACACGTAGTTATGGGCGTAAGGAATATGGAAGCTGGCAAAGATGTTAAAAAAGCAATAATTCAACAGAAACCAACGGCAAGAGTCGAAGCCATGGAGTTGGATCTTAGCTCAATTGCGTCAGTAAGGAAATTTGCTGAAGATGTCAAGTCCTTAGATCTTCCACTCAACATTCTCATTAATAATGCAGGGGTTATGGCCACACCATTCATCCTTTCTAAAGACAATATTGAACTACAATTTGCAACAAACCATTTAGGACATTTTCTTTTGACCAATCTATTATTGGAGACCATGAAAAAAACTGCAGCTAAAAGCGGAAGGGAAGGGAGGATTGTCAATGTTTCATCACGGCGTCATCAATTCTCCTATCAAGAGGGTATTCGTTTCGATAAAATCAACAATCAAGCGAGTTACAACAGCCTATCTGCATATGGTCAATCAAAACTTGCTAATGTTTTGCATGCTTTTGAACTTTCCAGACAGCTAAAGGAAGATGGTATACAGATAACTGCGAATTCAGTTCATCCAGGATTCATTGCCACCAATCTCTTTCGACATGTCAACATCATTAATGGTCTTCTTGTCATTTTTGGTAAACATATAGCAAAAGACATTCCACAGGGTGCAGCTACTACATGTTATGTGGCATTGCATCCAGACCTCCAAGGCATTACGGGGCAGTATTTTAGCGATAGTAATGTATCGAGAGCGAGCTCACAAGGTAATGATAGAGAACTTGCAAAGAATCTCTGGGATTTTAGTCTCAAGTTGATCAATCAAGCTTGA 948 41.56 MWVFRRRGASGFSASSTAEQVTEGVGGSGLTAIVTGASSGIGTETARVLALHGVHVVMGVRNMEAGKDVKKAIIQQKPTARVEAMELDLSSIASVRKFAEDVKSLDLPLNILINNAGVMATPFILSKDNIELQFATNHLGHFLLTNLLLETMKKTAAKSGREGRIVNVSSRRHQFSYQEGIRFDKINNQASYNSLSAYGQSKLANVLHAFELSRQLKEDGIQITANSVHPGFIATNLFRHVNIINGLLVIFGKHIAKDIPQGAATTCYVALHPDLQGITGQYFSDSNVSRASSQGNDRELAKNLWDFSLKLINQA 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43395479 43402929 - Bma008461.1 Bma12g01115 92541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01115 315 PANTHER RETINOL DEHYDROGENASE 2 312 - -
Bma12g01115 315 Pfam short chain dehydrogenase 31 174 IPR002347 -
Bma12g01115 315 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 312 - -
Bma12g01115 315 Gene3D - 27 315 - -
Bma12g01115 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Bma12g01115 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Bma12g01115 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Bma12g01115 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Bma12g01115 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 289 IPR036291 -
Bma12g01115 315 CDD retinol-DH_like_SDR_c_like 29 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01115 - - - vvi:100247484 454.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01667 Bma-Chr4:52491028 Bma12g01115 Bma-Chr12:43395479 2.09E-99 dispersed
Bma05g00836 Bma-Chr5:45739126 Bma12g01115 Bma-Chr12:43395479 2.22E-151 dispersed
Bma11g00697 Bma-Chr11:16458724 Bma12g01115 Bma-Chr12:43395479 4.28E-21 dispersed
Bma12g01115 Bma-Chr12:43395479 Bma14g02056 Bma-Chr14:43906972 6.38E-151 dispersed
Bma12g01115 Bma-Chr12:43395479 Bma03g00790 Bma-Chr3:7283347 1.31E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1173 Cone5ag0880 Cone14ag0073 Cone15ag0076 . . Chy09g01373 . . . . . . . . Bma12g01115 . . . . . . . . . Bhi12g00030 . . Lac11g0045 . . Lcy12g0042 . . . . . . . Lsi09g00093 . . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01115 Bma_Chr12 FPKM 8.371091 8.153338 9.19616 9.46151 7.232897 9.901387 8.918462 12.656398 13.381992 12.351607