Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01117 ATGGCTTCTTCTCCAAACGTCAGCATACGAGTTGTAGCGAAAGTGAAGGGATTGTCAGCTCGGGAATTGGAACTTGCAGGTGCGGATCCAGCAAAACCTTGGATTTTTGTTGATACTAAAGGTGAAGACTCTTCAGGGGCCGTAAAAATCACGTTTGCAGAGCAATCTTCTGGGTCGAAAGAGTCGTACGGATTGGATTATTGCTATCACCAAAACGAAGAGAATGTTAACATTTTTACCAGAGAAATAAAATCTCTAATATCGGGGGTATTTGATGGCCATAATTCTACTGTTATAGCCTATGGAGCTAAAGGCAGTGGAAAGACCAGCCTGATTCAGGGTTTTACGGAAAAACCTGGTTTGGCAGCATTATCTATGGCTGATTTTCTCATGATGGCAGAAGAAAAAGGAAAAACAGTTTCTATATCTTTCTATGAGGTTTATTTGGACCATGTATATGATCTATTGGATGCAAAGCGGCCGCAGGTTTTGTTGTTGGACGATGGACGAGGCAAAATTCAACTTAAGGGGCTTTCAAGAGTTCGAGTTAATTCTATTTCGGAATTTTATAAATTATATTTTTTGGGATCTAGCTCACGTAAACCAACACAAAAGATGACAGCTGTGCTTCCTCTTCGAAGCCACAAGGGCTTGATTGTATATTTATCACATGCTAATGAAATGTTTGATACCCGTGACGTCAAGATGAATTTCGTTGACTTGGCTGGTTATGAGGATGCTAGAAGGAAAAGTAGCGATGGTCAGAATTTTGTGGAGATTAGTAAAGTTAACAAGTCTATATATGACTTGATGAATGTTTTATATGCTTTGAACATTAATGATAGTCATGTTCCTTACCGAGAAAGCAAAGTTATGCGCATGCTACGTGATTCCTTTGAAGCAAAAAGCAAAATTGTAGTAGTTGCATGCTTGAACCCATATTTTTGCCAAAATTCTATTTATATGGTAAGTTTGGGATCTCGTTTATGTCAAGGAAACGAAAGAGATATTTCAGCCTTCCCTCGGAAAGCCAAAGTTTTCACTAGAAATTTAGGCTCATCACAAATACATGGGAGTGTCACTGTTCATGCAAAGAAACAAAACATCTCCCGAGTAGTTCATTATGAGAAGAAACCACAGGCCAATCCTAAGATGGCCCTTCCTATGAGAAGAAGAAAATTAGCTGTCAACGCACGTGACTCGCAAAAATCAAATAAGGAAAGTATCTTGGAGACTTGCGATAGTAACATTGAGGAAGATATCAATGTAAAAAAGGCTGCAGAGGAATTTGCTTCCAACGAGATTAGTAGCATAGACGAATCATGCATTGTAGGAGAAGACAGTAATCTCGATAATTTGGCGGCACATGAGTTTTCTCTTACCATGAGCAGTAGTAAAGAAAGATCAGATGATAATAAAGATGAGGGATCCACAAGTTTATTGACCAATATCAGTGACCATATCGAAGAAGTTAGTTCAAAAATCGAAAGAGCAAATGAAGAATCGTCTCCTAAAGATGATGTGAAGATAGCAAAGGAGAATGTTAGTTCACAAATCAATGAGACTACATCTCCATCATTGAGTGCAAGATTACGAGATCTTACTAACGAGATGAGATCTTTATATTCTGCAAGACCATTATCCATGAACATTCATCCCATCTGTGAAACTCCATCCTCCGATTTACGTTCCATTAGTCTCGTGGAATATCAAACTCCAGTAAGAAAAGAAAACATTATTGGCAATGATAAACATGACGCTGCTCGTTTTAATAGTCCGTGGGAAAGATTCAGCTCCCGTAGTAAAGGAGTACAGAATTCTCTCGTTGACGACTATCTTAAATTTCTGAATACCGCAAACAAGGAAGAGCTTACAAAATTGAAGGGCATTGGGGATAAGAGAGCAACTGCCATTATTGAATTCCGTGATGCTTCTCCAGAGCCATTTAAGAGTCTTGATGATTTGAAAGAGATAGGACTCTCCGCAAAGCAGATAAAGGGACTGCTGAGAAAGGAAATGGGAGGGCTATTCAACTAA 2037 38.93 MASSPNVSIRVVAKVKGLSARELELAGADPAKPWIFVDTKGEDSSGAVKITFAEQSSGSKESYGLDYCYHQNEENVNIFTREIKSLISGVFDGHNSTVIAYGAKGSGKTSLIQGFTEKPGLAALSMADFLMMAEEKGKTVSISFYEVYLDHVYDLLDAKRPQVLLLDDGRGKIQLKGLSRVRVNSISEFYKLYFLGSSSRKPTQKMTAVLPLRSHKGLIVYLSHANEMFDTRDVKMNFVDLAGYEDARRKSSDGQNFVEISKVNKSIYDLMNVLYALNINDSHVPYRESKVMRMLRDSFEAKSKIVVVACLNPYFCQNSIYMVSLGSRLCQGNERDISAFPRKAKVFTRNLGSSQIHGSVTVHAKKQNISRVVHYEKKPQANPKMALPMRRRKLAVNARDSQKSNKESILETCDSNIEEDINVKKAAEEFASNEISSIDESCIVGEDSNLDNLAAHEFSLTMSSSKERSDDNKDEGSTSLLTNISDHIEEVSSKIERANEESSPKDDVKIAKENVSSQINETTSPSLSARLRDLTNEMRSLYSARPLSMNIHPICETPSSDLRSISLVEYQTPVRKENIIGNDKHDAARFNSPWERFSSRSKGVQNSLVDDYLKFLNTANKEELTKLKGIGDKRATAIIEFRDASPEPFKSLDDLKEIGLSAKQIKGLLRKEMGGLFN 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43411166 43415774 + Bma008463.1 Bma12g01117 92543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01117 678 MobiDBLite consensus disorder prediction 489 512 - -
Bma12g01117 678 SUPERFAMILY RuvA domain 2-like 604 668 IPR010994 -
Bma12g01117 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 325 IPR027417 -
Bma12g01117 678 PANTHER KINESIN-RELATED 9 666 IPR027640 GO:0003777|GO:0007018
Bma12g01117 678 SMART kinesin_4 6 334 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g01117 678 Pfam Helix-hairpin-helix motif 616 664 - -
Bma12g01117 678 PANTHER KINESIN-LIKE PROTEIN KIN-10C 9 666 - -
Bma12g01117 678 Coils Coil 481 501 - -
Bma12g01117 678 SMART HhH1_4 622 641 IPR003583 GO:0003677|GO:0006281
Bma12g01117 678 Gene3D - 603 675 - -
Bma12g01117 678 Gene3D Kinesin motor domain 1 329 IPR036961 -
Bma12g01117 678 MobiDBLite consensus disorder prediction 462 524 - -
Bma12g01117 678 ProSiteProfiles Kinesin motor domain profile. 8 332 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g01117 678 PRINTS Kinesin heavy chain signature 235 253 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g01117 678 PRINTS Kinesin heavy chain signature 284 305 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g01117 678 PRINTS Kinesin heavy chain signature 93 114 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g01117 678 Pfam Kinesin motor domain 51 314 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01117 K10403 KIF22; kinesin family member 22 - csv:101218738 544.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01395 Bma-Chr4:48434800 Bma12g01117 Bma-Chr12:43411166 1.13E-15 dispersed
Bma12g01117 Bma-Chr12:43411166 Bma15g01090 Bma-Chr15:43435777 1.81E-34 dispersed
Bma12g01117 Bma-Chr12:43411166 Bma14g00478 Bma-Chr14:5404537 3.22E-28 transposed
Bma12g01117 Bma-Chr12:43411166 Bma07g01518 Bma-Chr7:50790428 2.48E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g714 . Blo15g00172 . . . Bpe07g00933 . . . . . Cma15g01088 . Car15g01000 . . . . . . . . . . Cla01g00444 Cam01g0467 Cec01g0456 Cco01g0478 Clacu01g0466 Cmu01g0444 Cre09g2068 Cone1ag1166 Cone5ag0876 . . . Csa05g00279 Chy09g01230 . . . Bda06g00688 . . . . Bma12g01117 . . Cmo15g01148 . . . . . Cpe13g00262 Bhi12g00497 . . . . . Lcy12g0037 . . . . . . . . . . Cme09g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009133 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01117 Bma_Chr12 FPKM 11.572068 11.509966 1.230576 1.017916 14.616363 14.223544 12.624981 1.507242 1.782892 2.134111