Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01125 ATGTCTGAAGCAAATATCCAGCCTCCTCCCGAATCCGTCATTGATCCATACCAATATCTTAAAATAGTCGTCAACTCCGACGGCTCGCTCACCCGTGATCTCACCACAATGCCCCAAGTACCGCCGTCACCGGATCCTAAGTCTCCGATCGGAGTTATTTCCAAAGATGTTTCCATTAACCAGTCAAAACAAACCGGCGCTCGGCTTTATCTTCCCCGCCATGAGCCTGAGCTATTCCCTTCCGAGAAGCTTCCTTTGTTGGTTTACTTCCATGGCGGAGGGTTTATAATCTGCAGTTATGCCTCGTCGATATTTCATGAATTTTGTGAAAGTACTGCCCTCCAACTTCGAGTGGCCATACTTTCTGTGGGATACCGGTTGAGCCCGGAGCACCGGCTGCCGGCGGCGTTTGACGATGCTGTGGAGGCGCTGTACTGGATTAGAACTTGTCAAGATGAGTGGCTAACAAGTTACGCTGACTTGTCTAATTGCTATCTCATGGGGTCCAGTGCTGGTGGGGCCATTGTGTACCATGCTGGCCTACGCGTCGCTGATCATGTTGAGGATCTTGATCCGATGAGAATCAAAGGGCTGATATTGCATCAACCGTTCTTCGGTGGAGTTCAGAGATCTGGATCAGAGCTAAGGCTTCTCAACAACGAGGCTTTTCCAGTATCTGCCGCCGATGTTATGTGGATGTTGTCACTGCCGGTCGGCGTTGACCGTGATCACGAGTACTGCAATCCGACGGCTGGCGGGGGCTCTAAGGAGTTGGAGAAGATCAAACGGCTGGGATGCAGAATTTTAGTGATCGGAGATGATGGGGACCCACTGATCGACCGTGCGATTGAGCTGGTGAAGCTGATGAAGGAAAAGGGTATAAATCAGGTGGTGGGTCATTTTACTGCCGGCGGTTATCATGGAGTGGAGATCATTAATCCTCCAAAGTCTAGGGTTGAAGAACTACACGTCGTTTTGAAGAATTTCATATTTAATAATTCAAATTAG 1008 49.31 MSEANIQPPPESVIDPYQYLKIVVNSDGSLTRDLTTMPQVPPSPDPKSPIGVISKDVSINQSKQTGARLYLPRHEPELFPSEKLPLLVYFHGGGFIICSYASSIFHEFCESTALQLRVAILSVGYRLSPEHRLPAAFDDAVEALYWIRTCQDEWLTSYADLSNCYLMGSSAGGAIVYHAGLRVADHVEDLDPMRIKGLILHQPFFGGVQRSGSELRLLNNEAFPVSAADVMWMLSLPVGVDRDHEYCNPTAGGGSKELEKIKRLGCRILVIGDDGDPLIDRAIELVKLMKEKGINQVVGHFTAGGYHGVEIINPPKSRVEELHVVLKNFIFNNSN 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43568516 43569523 + Bma008473.1 Bma12g01125 92551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01125 335 Pfam alpha/beta hydrolase fold 87 308 IPR013094 GO:0016787
Bma12g01125 335 Gene3D alpha/beta hydrolase 17 334 IPR029058 -
Bma12g01125 335 SUPERFAMILY alpha/beta-Hydrolases 22 317 IPR029058 -
Bma12g01125 335 PANTHER CARBOXYLESTERASE 120-RELATED 12 331 - -
Bma12g01125 335 PANTHER ARYLACETAMIDE DEACETYLASE 12 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01125 - - - pper:18785196 382.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00800 Bma-Chr4:9151626 Bma12g01125 Bma-Chr12:43568516 1.87E-94 dispersed
Bma12g01125 Bma-Chr12:43568516 Bma12g01141 Bma-Chr12:43878701 0 dispersed
Bma12g01125 Bma-Chr12:43568516 Bma12g01126 Bma-Chr12:43595038 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g620 . Blo15g00160 . . . Bpe07g00947 . . Cmo16g00141 Cmo18g01259 . Cma15g01203 . Car15g01090 Sed01g3914 . Cpe14g00115 Bhi01g01343 Tan01g0269 Cmetu06g2712 Lac11g2126 Hepe07g0173 Mch10g0169 . Cla01g00293 Cam01g0304 Cec01g0295 Cco01g0311 Clacu01g0304 Cmu01g0289 . . . . . . Csa05g00316 Chy09g01192 Cme06g00981 . . Bda06g00674 . . . . Bma12g01125 . . Cmo15g01268 Cma16g00136 Cma18g01236 Car16g00120 Car18g01140 Cpe09g00100 Cpe13g00172 Bhi12g00210 . . Lac11g2126 Hepe06g1576 . Lcy12g1687 . . . . . . . . Csa03g01695 Chy06g00930 Cme09g01727
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002516 3 1 2 7 2 2 0 2 2 1 2 2 1 1 1 2 2 2 1 3 1 2 1 2 2 2 1 2 1 5 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01125 Bma_Chr12 FPKM 4.335657 4.548275 9.007037 8.772977 38.854542 36.022995 31.721062 6.562931 6.957187 5.284294