Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01131 ATGGAGGATTTCTCAAACTATTTTGATTCTAATTATGGGTCTTCGGAAAGAAGTGATGTTAGCTGGACGGGAAATTTTTCCGACGAGGAGGTTTTTCTGGCGGCGAGCTATCCCAAGAAGAGGGCTGGACGGAAGAAGTTTAAGGAGACTAGGCATCCGGTTTACCGGGGAGTGAGGAGGAGGAATTCCGGCAAGTGGGTTTGCGAAGTAAGAGAGCCGAGTAAGCAGGCGAGGATTTGGCTGGGGACGTTTCCGACGGCTGAAATGGCTGCTCGCGCCCATGACGTGGCAGCCATTGCCCTCCGAGGCCGAGGAGCTTTCCTGAATTTCGCTGACTCAGCGTGGCGACTTCCAGTGCCGGCGTCGGCAGATGCAAAGGATATTCAGAAAGCAGCGGCTGAAGCTGCAGAGGCTTTTCGTCCGACGGAGACCAATCCACTGCAGAGGGAGGTCCACCCTGACAAGTCGGATGTGGGAGCCGCCGGGAGGATGCCGGAAAATGTGTTCTACATGGACGATGAGGATGTTTTCGGGATGCCTGAGTTGCTGGTGAACATGGCAGAGGGAATGCTACTGCCGCCGCCGCCGCCACCGCCGCCGCAAAGGGAAGAAAGCAGAGTTGATGACGCGGATTTTGATGCTGACCTGCCACTATGGAGTCATTCTATCTGA 672 55.21 MEDFSNYFDSNYGSSERSDVSWTGNFSDEEVFLAASYPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPSKQARIWLGTFPTAEMAARAHDVAAIALRGRGAFLNFADSAWRLPVPASADAKDIQKAAAEAAEAFRPTETNPLQREVHPDKSDVGAAGRMPENVFYMDDEDVFGMPELLVNMAEGMLLPPPPPPPPQREESRVDDADFDADLPLWSHSI 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43700609 43701280 - Bma008482.1 Bma12g01131 92557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01131 223 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Bma12g01131 223 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Bma12g01131 223 MobiDBLite consensus disorder prediction 1 20 - -
Bma12g01131 223 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Bma12g01131 223 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 15 223 - -
Bma12g01131 223 MobiDBLite consensus disorder prediction 189 223 - -
Bma12g01131 223 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 15 223 IPR045277 GO:0003700
Bma12g01131 223 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Bma12g01131 223 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Bma12g01131 223 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Bma12g01131 223 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Bma12g01131 223 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma10g01190 Bma12g01131 CCT
Bma10g01190 Bma12g01131 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00345 Bma-Chr8:6219460 Bma12g01131 Bma-Chr12:43700609 2.78E-105 dispersed
Bma12g01131 Bma-Chr12:43700609 Bma14g02069 Bma-Chr14:44058205 1.46E-73 dispersed
Bma10g01190 Bma-Chr10:42087308 Bma12g01131 Bma-Chr12:43700609 3.39E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58176 PF00847 AP2 4.30E-15 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01131 - K09286 qsu:112027778 248.054