Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma12g01166 | ATGTCATTCCGCAGCATAGTCCGGGACGTGAGGGATGGATTTGGAAGCTTTTCGAGGCGTAGTTTTGAGGCGGGAATCCCAGGTCACCATAGAGGGAAATCCCACGGGGCCGTCCATGAGATGACCGACCACCCTCTTGTAATCCAAACTAGTCCTTGGGCTAGTCTCCCAACAGAACTACTGAGGGATGTTGTCAAAAGATTGGAAGAGAGTGAGAGTACTTGGCCGTCACGGAAGCATGTTGTCTCCTGTGCTTCTGTGTGTAGGTCATGGAGAGAAATGTGCCAGGAAATTGTCCAAAATCCGGAGTTTTCTGGCAAGATCACGTTTCCAGTCTCCTTGAAGCAGCCTGGGTCTCGAGACGGAACAATTCAGTGCTTCATTAAGAGGGATAAATCTAATTTAACTTACCGGCTTTTCCTTTGCCTTAGTCCTGCTTTACTTGTTGAGAATGGAAAATTTCTCCTTTCAGCGAAACGAACGAGGAGAACTACCTGCACCGAATACGTGATCTCCATGGATGCTGATAATATATCAAGATCAAGCTGCACATACATCGGAAAGATAAGGTCAAATCTTCTGGGGACGAAATTCTTAATATACGATACGCAGCCTCCTTACAACAGCGTGCAACTTTCCCCAACAGGTCGAAGCCAAAGACTTACCTCGAAGAAAATTTCTCCGAAAGTCCCCACAGGTAATTACAATATTGCCGAGGTTACATACGAGCTGAATGTTTTAGGGACGCGGGGCCCACGGAGAATGCACTGCACCATCCATTCGATCCCCGTCTCGGCCATCGAGCCAGGAGGCACCATCCCCGGCCAGCCCAAGCTCCTCCCCCGTTCCCTCGAGGACTCCTTCCGAAGCATTTCCTTCTCAAAGTCGATTGATAACAGCACCGAGTTTAGCAGTGCTCGCTTCTCTGACATTGTGAGGCTGAATGAAGATCAAGAAGAACATGAAGAGGATGAGTCGAAAGAAAAGATCAGACCCTTAATTCTCAAGAACAAATCACCTCGCTGGCATGAACAGTTGCAGTGTTGGTGCCTTAACTTCCGAGGGCGGGTGACTGTGGCCTCGGTCAAGAACTTTCAGCTGATAGCAGCAGCTGAGGAATCTCCTCCTGCTCAGCCTGTCCAGCCAGACCATGACAAGATAATTCTTCAGTTTGGCAAGGTTGGAAAAGATCTGTTTACCATGGATTATAGATATCCTTTGTCTGCATTTCAAGCTTTTGCCCTGTGTTTGAGCAGCTTCGACACGAAATTGGCTTGTGAA | 1281 | 48.17 | MSFRSIVRDVRDGFGSFSRRSFEAGIPGHHRGKSHGAVHEMTDHPLVIQTSPWASLPTELLRDVVKRLEESESTWPSRKHVVSCASVCRSWREMCQEIVQNPEFSGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYRLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSCTYIGKIRSNLLGTKFLIYDTQPPYNSVQLSPTGRSQRLTSKKISPKVPTGNYNIAEVTYELNVLGTRGPRRMHCTIHSIPVSAIEPGGTIPGQPKLLPRSLEDSFRSISFSKSIDNSTEFSSARFSDIVRLNEDQEEHEEDESKEKIRPLILKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAEESPPAQPVQPDHDKIILQFGKVGKDLFTMDYRYPLSAFQAFALCLSSFDTKLACE | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 44318478 | 44321739 | + | Bma030541 | Bma12g01166 | 92592 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma12g01166 | 427 | Gene3D | - | 48 | 101 | - | - | |
Bma12g01166 | 427 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 427 | IPR025659 | - | |
Bma12g01166 | 427 | SUPERFAMILY | F-box domain | 48 | 96 | IPR036047 | GO:0005515 | |
Bma12g01166 | 427 | ProSitePatterns | Tub family signature 1. | 353 | 366 | IPR018066 | - | |
Bma12g01166 | 427 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
Bma12g01166 | 427 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Bma12g01166 | 427 | PRINTS | Tubby superfamily signature | 335 | 352 | IPR000007 | - | |
Bma12g01166 | 427 | PRINTS | Tubby superfamily signature | 384 | 403 | IPR000007 | - | |
Bma12g01166 | 427 | PRINTS | Tubby superfamily signature | 405 | 427 | IPR000007 | - | |
Bma12g01166 | 427 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Bma12g01166 | 427 | PRINTS | Tubby superfamily signature | 353 | 369 | IPR000007 | - | |
Bma12g01166 | 427 | Pfam | F-box domain | 53 | 101 | IPR001810 | GO:0005515 | |
Bma12g01166 | 427 | Pfam | Tub family | 114 | 422 | IPR000007 | - | |
Bma12g01166 | 427 | PANTHER | TUBBY-RELATED | 1 | 427 | - | - | |
Bma12g01166 | 427 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 1 | 427 | - | - | |
Bma12g01166 | 427 | Gene3D | Tubby Protein; Chain A | 110 | 427 | IPR025659 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g02507 | Bma-Chr1:82764747 | Bma12g01166 | Bma-Chr12:44318478 | 0 | dispersed | |
Bma05g00558 | Bma-Chr5:31534520 | Bma12g01166 | Bma-Chr12:44318478 | 0 | dispersed | |
Bma05g00585 | Bma-Chr5:34169253 | Bma12g01166 | Bma-Chr12:44318478 | 0 | dispersed | |
Bma12g00402 | Bma-Chr12:8538269 | Bma12g01166 | Bma-Chr12:44318478 | 0 | dispersed | |
Bma12g01166 | Bma-Chr12:44318478 | Bma04g00369 | Bma-Chr4:2965742 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58178 | PF01167 | Tub | 1.60E-112 | CL0395 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma12g01166 | K19600 | - | qsu:111992792 | 731.48 |