Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01166 ATGTCATTCCGCAGCATAGTCCGGGACGTGAGGGATGGATTTGGAAGCTTTTCGAGGCGTAGTTTTGAGGCGGGAATCCCAGGTCACCATAGAGGGAAATCCCACGGGGCCGTCCATGAGATGACCGACCACCCTCTTGTAATCCAAACTAGTCCTTGGGCTAGTCTCCCAACAGAACTACTGAGGGATGTTGTCAAAAGATTGGAAGAGAGTGAGAGTACTTGGCCGTCACGGAAGCATGTTGTCTCCTGTGCTTCTGTGTGTAGGTCATGGAGAGAAATGTGCCAGGAAATTGTCCAAAATCCGGAGTTTTCTGGCAAGATCACGTTTCCAGTCTCCTTGAAGCAGCCTGGGTCTCGAGACGGAACAATTCAGTGCTTCATTAAGAGGGATAAATCTAATTTAACTTACCGGCTTTTCCTTTGCCTTAGTCCTGCTTTACTTGTTGAGAATGGAAAATTTCTCCTTTCAGCGAAACGAACGAGGAGAACTACCTGCACCGAATACGTGATCTCCATGGATGCTGATAATATATCAAGATCAAGCTGCACATACATCGGAAAGATAAGGTCAAATCTTCTGGGGACGAAATTCTTAATATACGATACGCAGCCTCCTTACAACAGCGTGCAACTTTCCCCAACAGGTCGAAGCCAAAGACTTACCTCGAAGAAAATTTCTCCGAAAGTCCCCACAGGTAATTACAATATTGCCGAGGTTACATACGAGCTGAATGTTTTAGGGACGCGGGGCCCACGGAGAATGCACTGCACCATCCATTCGATCCCCGTCTCGGCCATCGAGCCAGGAGGCACCATCCCCGGCCAGCCCAAGCTCCTCCCCCGTTCCCTCGAGGACTCCTTCCGAAGCATTTCCTTCTCAAAGTCGATTGATAACAGCACCGAGTTTAGCAGTGCTCGCTTCTCTGACATTGTGAGGCTGAATGAAGATCAAGAAGAACATGAAGAGGATGAGTCGAAAGAAAAGATCAGACCCTTAATTCTCAAGAACAAATCACCTCGCTGGCATGAACAGTTGCAGTGTTGGTGCCTTAACTTCCGAGGGCGGGTGACTGTGGCCTCGGTCAAGAACTTTCAGCTGATAGCAGCAGCTGAGGAATCTCCTCCTGCTCAGCCTGTCCAGCCAGACCATGACAAGATAATTCTTCAGTTTGGCAAGGTTGGAAAAGATCTGTTTACCATGGATTATAGATATCCTTTGTCTGCATTTCAAGCTTTTGCCCTGTGTTTGAGCAGCTTCGACACGAAATTGGCTTGTGAA 1281 48.17 MSFRSIVRDVRDGFGSFSRRSFEAGIPGHHRGKSHGAVHEMTDHPLVIQTSPWASLPTELLRDVVKRLEESESTWPSRKHVVSCASVCRSWREMCQEIVQNPEFSGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYRLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSCTYIGKIRSNLLGTKFLIYDTQPPYNSVQLSPTGRSQRLTSKKISPKVPTGNYNIAEVTYELNVLGTRGPRRMHCTIHSIPVSAIEPGGTIPGQPKLLPRSLEDSFRSISFSKSIDNSTEFSSARFSDIVRLNEDQEEHEEDESKEKIRPLILKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAEESPPAQPVQPDHDKIILQFGKVGKDLFTMDYRYPLSAFQAFALCLSSFDTKLACE 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 44318478 44321739 + Bma030541 Bma12g01166 92592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01166 427 Gene3D - 48 101 - -
Bma12g01166 427 SUPERFAMILY Tubby C-terminal domain-like 102 427 IPR025659 -
Bma12g01166 427 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Bma12g01166 427 ProSitePatterns Tub family signature 1. 353 366 IPR018066 -
Bma12g01166 427 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Bma12g01166 427 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bma12g01166 427 PRINTS Tubby superfamily signature 335 352 IPR000007 -
Bma12g01166 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Bma12g01166 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Bma12g01166 427 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bma12g01166 427 PRINTS Tubby superfamily signature 353 369 IPR000007 -
Bma12g01166 427 Pfam F-box domain 53 101 IPR001810 GO:0005515
Bma12g01166 427 Pfam Tub family 114 422 IPR000007 -
Bma12g01166 427 PANTHER TUBBY-RELATED 1 427 - -
Bma12g01166 427 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 427 - -
Bma12g01166 427 Gene3D Tubby Protein; Chain A 110 427 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02507 Bma-Chr1:82764747 Bma12g01166 Bma-Chr12:44318478 0 dispersed
Bma05g00558 Bma-Chr5:31534520 Bma12g01166 Bma-Chr12:44318478 0 dispersed
Bma05g00585 Bma-Chr5:34169253 Bma12g01166 Bma-Chr12:44318478 0 dispersed
Bma12g00402 Bma-Chr12:8538269 Bma12g01166 Bma-Chr12:44318478 0 dispersed
Bma12g01166 Bma-Chr12:44318478 Bma04g00369 Bma-Chr4:2965742 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58178 PF01167 Tub 1.60E-112 CL0395 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01166 K19600 - qsu:111992792 731.48