Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma12g01178 | ATGCAGGATAATGGAATTCTCAAGCTATCTCTTGGACTGACGTCAGCTCTGGTTTTCGCTGTTCTTCTACTGTTCGTCCTGTTTTACACCAAAATTCTGGTGAAAAACAAGCTGGAAGACGTGGAAAGAACGGAGAAAAAGCAGAAGGAAGATGCTACAGAGGCTGAGGATTTGATCACCTTTCAAGGTGGAGAGGACCTCGAAATCGCCGATATTTTAGAAGCTCCGGGTGAAGTGATCGGAAAATCCGGGCATGGGACTTTGTACAAAGCTCTGTTACCGAAGAACAACGCGATGAAGCTGCTTAGATTCTTGAGCCCATTATCGACCTCGAAGAGTGCAGATTTGGGTCAGATTATTGGGTTTCTGGGCTCCATTAGGAACCCTAATTTGGTGCCTTTGCTTGGAGTGTATGCAGGACTGAGGGGAGAGAAGCTTCTTGTTCATCCATTTTACAGCCATGGAAATCTCTCTCAGTTCATCAGAGTTGGAAATGCTGAAACTCACAGATGGGCAATCATATACAAGATCTCACTGGGAATAGCACTTGGGTTGGATCACCTTCACACTGGCTATGAAAAGCCAATCATCCATGGAAATCTCAAGTCTAAGAACATTCTTCTTGGTAGAAATTACGACCCTTTTGTTTCCGATTTTTCCCTGCATCTGCTTTTGAATCCTAATTCCGGACAAGAACTACTCGAAGCTTTGGCAGTCGACGGGTATAAAGCGCCCGAGCTGATAAAGATGCGAGATAGCAATGAAGAAACTGATGTTTATAGCTACGGTGTTGTTTTACTTGAGCTACTCACCGGGAAAGAGCCTATCAACGAGAAGTCGAGTCCTGACCGAGAGATCGATCTTCCGACATTGATGAGAAATTCAATTTTGGAAAACGGGGTTATGGATTTGTGTCATCCCGATATATTTGCTCGGAACAAAAGTTTCGAAGAAAATGTTGTTGGCGAAGATCAAATTCTCAAGTTCTTTCAACTCGCCATGGCTTGTTGTTCGGTTTCACCCTCTCTTCGACCGAGTATGAAGCAAGTTATTTGGAAGCTTGAAGAGATTGGAAAATAA | 1080 | 43.7 | MQDNGILKLSLGLTSALVFAVLLLFVLFYTKILVKNKLEDVERTEKKQKEDATEAEDLITFQGGEDLEIADILEAPGEVIGKSGHGTLYKALLPKNNAMKLLRFLSPLSTSKSADLGQIIGFLGSIRNPNLVPLLGVYAGLRGEKLLVHPFYSHGNLSQFIRVGNAETHRWAIIYKISLGIALGLDHLHTGYEKPIIHGNLKSKNILLGRNYDPFVSDFSLHLLLNPNSGQELLEALAVDGYKAPELIKMRDSNEETDVYSYGVVLLELLTGKEPINEKSSPDREIDLPTLMRNSILENGVMDLCHPDIFARNKSFEENVVGEDQILKFFQLAMACCSVSPSLRPSMKQVIWKLEEIGK | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 44622656 | 44624393 | - | Bma008535.1 | Bma12g01178 | 92604 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma12g01178 | 359 | Gene3D | Phosphorylase Kinase; domain 1 | 35 | 151 | - | - | |
| Bma12g01178 | 359 | SUPERFAMILY | Protein kinase-like (PK-like) | 77 | 355 | IPR011009 | - | |
| Bma12g01178 | 359 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED | 1 | 358 | - | - | |
| Bma12g01178 | 359 | Gene3D | Transferase(Phosphotransferase) domain 1 | 153 | 359 | - | - | |
| Bma12g01178 | 359 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 1 | 358 | - | - | |
| Bma12g01178 | 359 | Pfam | Protein tyrosine and serine/threonine kinase | 78 | 351 | IPR001245 | GO:0004672|GO:0006468 | |
| Bma12g01178 | 359 | ProSiteProfiles | Protein kinase domain profile. | 74 | 357 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Bma12g01178 | 359 | Coils | Coil | 38 | 58 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma12g01178 | Bma-Chr12:44622656 | Bma08g01217 | Bma-Chr8:51208071 | 3.58E-48 | dispersed | |
| Bma12g01175 | Bma-Chr12:44561562 | Bma12g01178 | Bma-Chr12:44622656 | 0 | proximal |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 66831 | PF07714 | PK_Tyr_Ser-Thr | 2.30E-25 | CL0016 | Bma | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma12g01178 | - | - | dzi:111290589 | 461.84 |