Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01182 ATGGCATTCTCCGGCGAAGATTCTGCGACGTTGGACCTTATTTCAGAGAGTCTCCTCGGTGACTTTTCCTCCATTGAAGCTTTCTTAAACGACGTCGATCTTTTTCCTAGGGAAGAAATTCGATTCGAAGATCCATTAGAGCCTTCCCGAGTCCTTCCCCGAGCTTCTAGTTTGAGTCACCGTCGTCCGATGTTAAACGTCGCGATACCTCCAGCGGCTGGATTTTCTGCAAATTACCAGTCTCAGTCGATGGGAGAAAGCGGTGACCAGAACTATGTAGCTCCGCATCCTAGCGAGACGAAGCACTACAGAGGCGTTCGCCGGCGGCCATGGGGGAAATTCGCAGCTGAGATTCGCGATCCAAAACAAAAAGGCGCGCGAGTGTGGCTCGGGACCTACGAAACAGCCATTGACGCTGCGAGAGCTTACGATAGAGCTGCCTTCGCAATGCGAGGAAGCAAAGCCATTGTCAACTTCCCGCTGGAAGCCGGCAAATATTCGGACACAGAGCCGCAGGGGAGAAGAGAGAGAAAAAGGAGTAGAGAGAGTGAGAATGAAGCGTATGAAGTTGCAGAGCGTAAAGTAGTGAAGAAGGAGGATTCTTTAAAAATGGAGGATACGGTCGGCGAAAGTAACTCGACAGCCAGCGTTTTGCCGGCGACGCCGTCGTGGTGGTCGCCAATTTGGGGTAACGACGTTAAAGGGATATTTGACGTGCCTCTGTTATCGCCGTTATCTCCTCATCCACTCATGGGTTATTCTCAGCTTAAAGTCACATAG 780 51.03 MAFSGEDSATLDLISESLLGDFSSIEAFLNDVDLFPREEIRFEDPLEPSRVLPRASSLSHRRPMLNVAIPPAAGFSANYQSQSMGESGDQNYVAPHPSETKHYRGVRRRPWGKFAAEIRDPKQKGARVWLGTYETAIDAARAYDRAAFAMRGSKAIVNFPLEAGKYSDTEPQGRRERKRSRESENEAYEVAERKVVKKEDSLKMEDTVGESNSTASVLPATPSWWSPIWGNDVKGIFDVPLLSPLSPHPLMGYSQLKVT 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 44646710 44647489 + Bma008539.1 Bma12g01182 92608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01182 259 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 236 - -
Bma12g01182 259 Gene3D AP2/ERF domain 101 162 IPR036955 GO:0003700|GO:0006355
Bma12g01182 259 SUPERFAMILY DNA-binding domain 102 161 IPR016177 GO:0003677
Bma12g01182 259 MobiDBLite consensus disorder prediction 165 189 - -
Bma12g01182 259 SMART rav1_2 102 166 IPR001471 GO:0003700|GO:0006355
Bma12g01182 259 MobiDBLite consensus disorder prediction 168 189 - -
Bma12g01182 259 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 6 236 - -
Bma12g01182 259 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Bma12g01182 259 PRINTS Ethylene responsive element binding protein signature 142 162 IPR001471 GO:0003700|GO:0006355
Bma12g01182 259 Pfam AP2 domain 102 152 IPR001471 GO:0003700|GO:0006355
Bma12g01182 259 ProSiteProfiles AP2/ERF domain profile. 102 160 IPR001471 GO:0003700|GO:0006355
Bma12g01182 259 CDD AP2 101 160 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01182 Bma-Chr12:44646710 Bma07g00915 Bma-Chr7:32987599 7.21E-32 dispersed
Bma12g01182 Bma-Chr12:44646710 Bma12g01183 Bma-Chr12:44650113 8.23E-97 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58179 PF00847 AP2 2.70E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01182 K09286 - qsu:112033852 216.468