Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01184 ATGGAACAGAAGCACATTTTGTTATCTGCTTTGGGCGTTGGGGTAGGTGTAGGGGTGGGGCTTGGATTGAGCTCTGCCCAAGCTGTCAGTAAATGGGTCGGAGGAAATAACTCGCCGGATGAGTTTTCCGGTGAGCAGATTGAGCAGGAGCTGATGAGGCTGGTGATTGATGGGAAAGCAACCAAAGTTATTTTTGATGAGTTTCCTTATTATCTAAGTGAGCGGACGCGAGTGTTATTGACAAGTGCTGCATATGTTCATTTAAAGCATATCGACATTGCCAAGCACACGCGCAATCTTTCACCGGCAAGTAGACTTATTTTGCTCTCGGGACCTGCTGAACTTTACCAGCAAATGCTAGCCAAGGCTTTGGCACATTATTTTGAATCGAAGTTGCTTTTGTTAGACGTTTCCGACTTTTCTCTTAAGATGCAGAGCAAATTCGGTCGTGTGAGGAAAGAATCTTCCTTCAAGAGGTCCATCTCTGAGGTGACATTTGAAAAAATGTCGAATCTTTTTGGCGCCTTCTCAATCCTTCCTCCGAGTGGGATCGCTAAAGGAACGATACGCCGAACGGATAGTTCTATGGAAATAAAATCGAGAAACTGTGACGGGTCTGAAAATCCTCCAAAACTTCGTAGAAATGCCTCTGCTGCCTCTGACATTAGTAGCTGCTCTTCAAAATCTGCTTCCTCAGATCAAGTTTCGTTGAAGCGCACGAGCAGCTGGTTTTTTGATGAAAAGCTGTTTCTACAATCGCTATACAAGGTGCTAGTATCGGTATCTGAAACTGGCTCCATTATTTTGTACCTGAGAGATGTCGAAAAGCTTCTTCTCCATTCACAAAGATTTTACCAAATGTTCACTAAGTTGTTGAACAAACTCTCTGGCTCGGTTTTAGTTCTCGGCTCTCGAATGGTGGACCCAGAAGACGATTTCAGAGAAGTGGATGAACGGATCAGCGTTTTATTTCCATACAACATCGAAATCAAACCCCCGGAAGACGAGACTCATCTTGTCAACTGGAAGGCTCAGCTGGAAGAGGACATGAAGATGATCCAGTTTCAAGATAATAAAAATCATATTGCAGAAGTTCTTGCTTCAAATGATCTTGAATGTGATGATTTGGGTTCGATTTGCCATGCCGATACCATCGTGTTGAGCAATTACATCGAAGAGATCGTTGTTTCTGCAATATCTTATCATTTGATGCATAGCAAAGACCCGGAATATCGAAATGGAAAACTTCTAATATCTTCCAAGAGTTTGTCCCATGGATTGAGCATATTTCAGGAAGGAAAAAGTGATGGAAAAGATACTATGAAGTTAGAGACAAATGCTGACTCTTCAAAGGAAGGTGGAGATGAAGCTCTTAGAACAAAAACAGAGGCAGAAAAATCCGGTTCTGCAGTTAAGAAGGATGGAGAGAATGCAAATCCTCAAAAAGCACCTGAAGTTGCTCCGGACAATGAGTTTGAAAAACGTATCCGGCCGGAAGTTATTCCGGCTAACGAGATCGGAGTGACATTTGATGACATCGGAGCGATGGACGAGATTAAAGAATCACTTCAAGAACTCGTAATGCTACCTCTCCAAAGGCCAAATCTCTTCAATGGAGGTCTTCTCAAGCCTTGCAGAGGCATTCTTCTATTCGGACCGCCGGGAACGGGAAAGACAATGCTGGCGAAGGCCATTGCCAACGAAGCTGGAGCTAGTTTCATCAACGTTTCTATGTCCACCATTACTTCGAAATGGTTCGGCGAAGACGAAAAGAATGTTAGAGCTCTCTTCACACTCGCTGCAAAGGTGTCTCCGACAATTATTTTTGTCGACGAGGTTGATAGTATGCTCGGGCAGAGGACTCGAGTAGGAGAGCATGAGGCCATGAGGAAAATAAAGAATGAATTTATGAGTCATTGGGATGGGCTTTTGACAAAGCCGGGTGAGCGAATTCTCGTTCTTGCTGCCACTAACCGGCCGTTTGATCTCGATGAAGCGATCATCCGTCGTTTTGAGCGAAGCAGAATTATGGTTGGCCTCCCCACGATCGAGAGCCGAGAGATGATCTTGAAAACTCTTCTGGCGAAAGAAAAGGTAGAAAACCTTGACTATAAGGAGCTTGCTACAATGACGGAAGGATTCAGCGGAAGCGATCTGAAGAATTTATGCGTGACGGCTGCTTACCGACCCGTGAGGGAGCTGCTCCAACAGGAGAGAATGAAGGATAAGGAGAAGAAGAAAAAAGAAGAAAACGGAAAAAGCTCAGATGAGAAGAGCTCGGATTCGTCAGAAAAGAAAGAAGATGATAAAGAAGAACAAGTAATTGTTTTGAGGTCTTTGAATATGGAAGATATGAAACAGGCGAAAAATCAGGTGGCCGCGAGTTTTGCTGCTGAAGGATCAATAATGGGTGAACTAAAGCAATGGAACGATTTGTACGGAGAGGGCGGTTCAAGGAAAAAGCAACAGCTAACTTACTTCCTCTAG 2487 44.03 MEQKHILLSALGVGVGVGVGLGLSSAQAVSKWVGGNNSPDEFSGEQIEQELMRLVIDGKATKVIFDEFPYYLSERTRVLLTSAAYVHLKHIDIAKHTRNLSPASRLILLSGPAELYQQMLAKALAHYFESKLLLLDVSDFSLKMQSKFGRVRKESSFKRSISEVTFEKMSNLFGAFSILPPSGIAKGTIRRTDSSMEIKSRNCDGSENPPKLRRNASAASDISSCSSKSASSDQVSLKRTSSWFFDEKLFLQSLYKVLVSVSETGSIILYLRDVEKLLLHSQRFYQMFTKLLNKLSGSVLVLGSRMVDPEDDFREVDERISVLFPYNIEIKPPEDETHLVNWKAQLEEDMKMIQFQDNKNHIAEVLASNDLECDDLGSICHADTIVLSNYIEEIVVSAISYHLMHSKDPEYRNGKLLISSKSLSHGLSIFQEGKSDGKDTMKLETNADSSKEGGDEALRTKTEAEKSGSAVKKDGENANPQKAPEVAPDNEFEKRIRPEVIPANEIGVTFDDIGAMDEIKESLQELVMLPLQRPNLFNGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTKPGERILVLAATNRPFDLDEAIIRRFERSRIMVGLPTIESREMILKTLLAKEKVENLDYKELATMTEGFSGSDLKNLCVTAAYRPVRELLQQERMKDKEKKKKEENGKSSDEKSSDSSEKKEDDKEEQVIVLRSLNMEDMKQAKNQVAASFAAEGSIMGELKQWNDLYGEGGSRKKQQLTYFL 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 44659318 44664304 - Bma008542.1 Bma12g01184 92610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01184 828 Gene3D - 508 796 IPR027417 -
Bma12g01184 828 SMART AAA_5 544 682 IPR003593 -
Bma12g01184 828 Pfam ATPase family associated with various cellular activities (AAA) 548 674 IPR003959 GO:0005524|GO:0016887
Bma12g01184 828 MobiDBLite consensus disorder prediction 435 472 - -
Bma12g01184 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 745 IPR027417 -
Bma12g01184 828 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 828 - -
Bma12g01184 828 MobiDBLite consensus disorder prediction 735 773 - -
Bma12g01184 828 ProSitePatterns AAA-protein family signature. 651 670 IPR003960 GO:0005524|GO:0016887
Bma12g01184 828 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 828 - -
Bma12g01184 828 Pfam AAA+ lid domain 701 744 IPR041569 -
Bma12g01184 828 Gene3D - 682 795 - -
Bma12g01184 828 Coils Coil 731 751 - -
Bma12g01184 828 MobiDBLite consensus disorder prediction 191 229 - -
Bma12g01184 828 CDD AAA 546 680 - -
Bma12g01184 828 MobiDBLite consensus disorder prediction 192 208 - -
Bma12g01184 828 MobiDBLite consensus disorder prediction 430 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01184 - - - jre:109010848 1280.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma12g01184 Bma14g02021 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01184 Bma-Chr12:44659318 Bma15g00541 Bma-Chr15:6274710 2.19E-16 dispersed
Bma12g01184 Bma-Chr12:44659318 Bma05g00841 Bma-Chr5:45960657 1.17E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g264 . . . . . Bpe07g00999 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda06g00769 . . . . Bma12g01184 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g811 . . . . . Bpe07g00999 . Bma14g02021 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0044 . . . . . . . Bda06g00769 Bda15g00666 . . . Bma12g01184 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g01184 Bma_Chr12 FPKM 4.307819 4.68393 6.814127 7.101427 5.586652 5.062201 5.597646 10.49976 9.910022 10.574052