Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g01196 ATGACTGCACTAACGGAACATCCTCTAAGGTGTAAGTATGGGAGGTTTGGGGAAATTGTCTACGAAGTTCTCTTGATCATTCAGCTAGCTTCATGCGTGATTGCAGTTTCACTTGATCCTTTGTTCTTATACATCCCTGTCATTAACCATCACGAAAAGTGCTTTCATTTTGACAAGAAGTTGCGGATAGCAGCTTTGGTTTTGCGATCGGTCACAGACATCATTTTATTGCTTCATATTGCTTTTCAGTTTTGTACTGGATATGTTGCGAGGCCGTTAATCGACATTCTATCACTTCTTCCCATCCCTCAGGTAGTAATTTTATCGATTATTCCAGGGTTGAAAGGCTCAAAATCTTTGACTGCAAGGAACATCCTTACAGCTCTTGTTTTATTGCAATATGTTCCCAGAGTTGGTCGAATTTACCCATTATGCAAGAAACTTACGTGGGTGCCAAAGATTATCAAGAAAACTCCTTGGACTATAGTTGCTCGTAATCTCTTTCTCTACCTGCTAGCAAGTCATGTACTTGGAGCATTGTGGTACTTCTTTTCCATTGAAAGAGAGTTAACATGCTGGCAAGAAGCTTGCAAGGGTCATCCTGGTTGTGGCCATAGTTCCTTCTTCTGTGATGATGGGATAAGAGCTACTGAATTCCTTCATGACATCTGTCCCGTAGATACTCCAAATACAAATCTTTTTGACTTCGGTATATTCCTGGATGCCCTTCAGTCTGGTATTGTGGAGTCAGTCAATTTATCCCAAAAACTTTTCCGTTGCCTCTGGTGGGGCCTCCAAAATATGAGTTCTCTTGGTCAAAACCTCAAAACAAGTAACTATGTCTGGGAGAATATTTTTGCAGTTTGTATATCCACCTCTGGCTTGGTTCTATTTTTATATTTCATTGGAAATATACAGACATATTTGCAGTTGAAAACTGTAAAAAAGGAGAAGAAAATTAAGATAAGGTCTAAAGAAGAGAAGAGAAGAGAAGAGAGGAAAAGAGGTCTAAGGTGCAAGATGTTGATAAATGGATGTCCAACAAACGTCTACCTGATGTTATTAAAAGGAGAATCAAGACTTGTGTAG 1089 39.39 MTALTEHPLRCKYGRFGEIVYEVLLIIQLASCVIAVSLDPLFLYIPVINHHEKCFHFDKKLRIAALVLRSVTDIILLLHIAFQFCTGYVARPLIDILSLLPIPQVVILSIIPGLKGSKSLTARNILTALVLLQYVPRVGRIYPLCKKLTWVPKIIKKTPWTIVARNLFLYLLASHVLGALWYFFSIERELTCWQEACKGHPGCGHSSFFCDDGIRATEFLHDICPVDTPNTNLFDFGIFLDALQSGIVESVNLSQKLFRCLWWGLQNMSSLGQNLKTSNYVWENIFAVCISTSGLVLFLYFIGNIQTYLQLKTVKKEKKIKIRSKEEKRREERKRGLRCKMLINGCPTNVYLMLLKGESRLV 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 44900779 44905024 + Bma008554.2 Bma12g01196 92622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g01196 362 SUPERFAMILY Voltage-gated potassium channels 26 310 - -
Bma12g01196 362 Gene3D - 23 311 - -
Bma12g01196 362 Pfam Ion transport protein 47 315 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma12g01196 362 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 329 - -
Bma12g01196 362 Coils Coil 315 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01196 Bma-Chr12:44900779 Bma12g01200 Bma-Chr12:44952681 0 dispersed
Bma12g01196 Bma-Chr12:44900779 Bma12g01197 Bma-Chr12:44907606 1.66E-74 tandem
Bma10g01292 Bma-Chr10:45870772 Bma12g01196 Bma-Chr12:44900779 1.02E-91 wgd
Bma12g01196 Bma-Chr12:44900779 Bma14g02001 Bma-Chr14:43378290 1.06E-78 wgd
Bma12g01196 Bma-Chr12:44900779 Bma08g00382 Bma-Chr8:8627202 6.31E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g01196 K05391 - sind:105160375 346.665